Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04038 ATGTCATCCGCAGATAATGTTGCAATTGAGGTTGTCCTCGTAGTGGCTGTGGTTGCGGTTAAGATAGGTATTTTGGTTTGTGTGTGCCGAAAAAGACATCAGATTGGTGATAGATCAGTTAGTCCAGACTCACAATTTCTGACACTTACTATGGATAAATTTCTCATTGACATGGAAAGGGAAAAGCCAATCAGGTTTACTGGTCAGCAGCTAAGGATTGCAACTGAAAACTACTCTAACTTGGTGGGGTCAGGAGGTTTTGGAGCAGTTTATAAGGGAATTTTTAGTAATGGAACAATGGTAGCTGTGAAGGTTCTACGTGGGAGTTCTGACAAGAAAATTGAGGAGCAGTTTATGGCAGAAGTGGGTACAATTGGTAGAATTCATCATTTCAATCTAGTTCGGTTATATGGGTTTTGCTTTGAAAGAAACTTGATAGCACTTGTTTATGAATACATGGGAAATGGCTCTCTTGACAGGTATCTGTTTCAGGAAAACAAGACCTTAGGATATGAAAAGCTTCATGAGATTGCTGTTGGGACAGCCAGAGGCATTGCTTACTTGCATGAAGAGTGTCAACAGAGAATAATCCACTATGACATAAAACCAGGAAATATTCTCTTGGATAGGAACTTCAATCCTAAAGTTGCTGATTTTGGTTTGGCCAAGCTTTGCAACAGGGAAAATACTCACATAACTATGACTGGAGGTAGGGGAACTCCTGGTTATGCTGCACCTGAGCTTTGGTTGCCATTTCCTATAACTCATAAGTGTGATATTTATAGCTTTGGTATGCTGTTATTTGAAATCATAGGTAGAAGAAGAAACCTTGACATTAAACTTCCTGAAAGCCAGGAGTGGTTTCCAATTTGGGTTTGGAAAAAGTTTGATGCTGGACAACTGGGGGAGTTAATAATTGTCTGTGAGATAGAGGAGAAAAATAAGGAGATAACAGAAAGAATGGTTAAGGTGGCTCTGTGTTGTGTTCAGTATAGGCCAGAATCAAGGCCTATAATGAGTGTTGTGGTGAAAATGTTGGAAGGTTCAGTAGAAATTCCAAAGCCTTTGAACCCATTTCAGTACTTGATGGATGGGACTCTGGCTGCTGCTGATCCAGTCCAAGTGTCACAGACCTATACAACAAGTATTTCTTCTGGCTCTTCTGTTATGGTAAGTGAATCTAGCATTGTATGTGCTACTCCTATTATGAGGAAGTATGAGATTGAATTAGCCTCTGGCAATGGGTGA 1248 0.4022 MSSADNVAIEVVLVVAVVAVKIGILVCVCRKRHQIGDRSVSPDSQFLTLTMDKFLIDMEREKPIRFTGQQLRIATENYSNLVGSGGFGAVYKGIFSNGTMVAVKVLRGSSDKKIEEQFMAEVGTIGRIHHFNLVRLYGFCFERNLIALVYEYMGNGSLDRYLFQENKTLGYEKLHEIAVGTARGIAYLHEECQQRIIHYDIKPGNILLDRNFNPKVADFGLAKLCNRENTHITMTGGRGTPGYAAPELWLPFPITHKCDIYSFGMLLFEIIGRRRNLDIKLPESQEWFPIWVWKKFDAGQLGELIIVCEIEEKNKEITERMVKVALCCVQYRPESRPIMSVVVKMLEGSVEIPKPLNPFQYLMDGTLAAADPVQVSQTYTTSISSGSSVMVSESSIVCATPIMRKYEIELASGNG. 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04038 415 Gene3D Transferase(Phosphotransferase) domain 1 153 354 - -
Seca5g04038 415 Gene3D Phosphorylase Kinase; domain 1 52 152 - -
Seca5g04038 415 Pfam Protein tyrosine and serine/threonine kinase 80 346 IPR001245 GO:0004672|GO:0006468
Seca5g04038 415 ProSitePatterns Protein kinases ATP-binding region signature. 82 104 IPR017441 GO:0005524
Seca5g04038 415 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 9 356 - -
Seca5g04038 415 SUPERFAMILY Protein kinase-like (PK-like) 59 347 IPR011009 -
Seca5g04038 415 ProSiteProfiles Protein kinase domain profile. 76 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g04038 415 ProSitePatterns Serine/Threonine protein kinases active-site signature. 196 208 IPR008271 GO:0004672|GO:0006468
Seca5g04038 415 FunFam Putative receptor-like protein kinase 153 354 - -
Seca5g04038 415 FunFam serine/threonine-protein kinase PBS1-like 50 152 - -
Seca5g04038 415 SMART serkin_6 76 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04038 Seca-Chr5 97686689 97688431 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04038 65 367 Receptor kinase-like Gene Family AT5G38280 40.836 3.11e-75 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Seca5g04038 PK_Tyr_Ser-Thr 1.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04038 - - gmx:100803355 673.7