Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04032 ATGGAGGGCCAATCAGCTAAACGCAGAAGAGTTTACTCACTTGAACCAAACAAAGTAGTGCAAGCAACATTTACTAGAAATTACATGAACTATTTAGTTCCAGCTTTGATGAAGATCAAGGAAAAGAGTTCTACAGAACATAACAGCTATTGTGATTTTCAGAGTGTTGTCAAGTATGAAGTGGACAAGGCAATGGTGTTCTCAGCTCAAGGTTTTGCATGGAGTAATGCTCTTAAAGTCAAGCTTCAAAAGGATGGAGTCAATGTGAATAGTGGCAGCACTGGCTTTGTTGAAAATAAGGCTGGTGAAGGTTCATCAAAGGTTTGTGACCAAAATGAAATGGTCCTCCCAATGGATTTTTTCTCTTCAAAGTCTGAGGCTAAGAATTTGATGTGTAAGCCTAAGCACAATGGTGACATGTCACAAATGGGAAAGGATTTAACAGGAGAAAATGATGATGATGAAGATGAAGATGAGGTTATCAATGGGCAGTTGAGGAGCTTAAGAAGGTTGATACCTGGAGGAGAAGAGATGTGTCATGAACAAATGGTGACAGAATTAGAGAGCTATGTAAGTTGTTTGCAAATGCAGGTGGACATTCTTCAATGTCTTGCTGAGAGTGAGACAAGTTGA 633 0.3949 MEGQSAKRRRVYSLEPNKVVQATFTRNYMNYLVPALMKIKEKSSTEHNSYCDFQSVVKYEVDKAMVFSAQGFAWSNALKVKLQKDGVNVNSGSTGFVENKAGEGSSKVCDQNEMVLPMDFFSSKSEAKNLMCKPKHNGDMSQMGKDLTGENDDDEDEDEVINGQLRSLRRLIPGGEEMCHEQMVTELESYVSCLQMQVDILQCLAESETS. 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04032 210 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 22 206 IPR044660 GO:0006355
Seca5g04032 210 CDD bHLH_AtIBH1_like 161 205 IPR044549 GO:0006355
Seca5g04032 210 MobiDBLite consensus disorder prediction 134 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04032 Seca-Chr5 97615484 97616116 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04032 1 82 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G30180 46.988 1.45e-14 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04032 - - aprc:113852314 266.544