Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04016 ATGGCCAACGATATCTCAAACTCTTTCCATTTCTTTGTCATCCTTGTTTTAGCTGTCACAGCACAAATGACAGTGGTAGAAGGAACATGCTCAGAAATTTTGGGTAATTGCGAAGCTGTAAATTGTGATCAGTATTGTAAAGCCCAGTACAGCAATGGAAAAGGGATTTGTAACACCAACATATGTAACTGTTTCTATGATTGTGGGCCTCCACCACCCCCAAGCCAACCAGTTAGGAAATGTGGCATTGCAATTGAACTCTGCAGTTCTCAATGTAATTCAAAGTGTGCCAGAGAATATAATCAGGGTTCAGGGGTTTGTTATCCCAACTATGGTATAAACGTGTGCGTTTGTAACTACAACTGTTAA 369 0.4038 MANDISNSFHFFVILVLAVTAQMTVVEGTCSEILGNCEAVNCDQYCKAQYSNGKGICNTNICNCFYDCGPPPPPSQPVRKCGIAIELCSSQCNSKCAREYNQGSGVCYPNYGINVCVCNYNC. 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04016 122 Pfam S locus-related glycoprotein 1 binding pollen coat protein (SLR1-BP) 87 122 IPR010851 -
Seca5g04016 122 Pfam S locus-related glycoprotein 1 binding pollen coat protein (SLR1-BP) 28 68 IPR010851 -
Seca5g04016 122 PANTHER DEFENSIN-LIKE PROTEIN 183 1 122 IPR039641 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04016 Seca-Chr5 97336700 97341976 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04016 5 122 Plant Defensins Gene Families AT5G38330 30.645 2.58e-09 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04016 - K06590 lja:Lj6g3v1329840.1 133.265