Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04009 ATGTTGCTTTCTCGTTGTAGTGGTGGTGAATATGGAACCACCGCCGCCGCCGCCTACCCTTCCGCGGCTTTCAATAACAACAACCGTGTGTTTGAGTGCAAGACATGTAACCGTCAGTTTTCATCGTTTCAAGCACTGGGAGGGCACCGTGCCAGCCACAAGAAGTCGAATTGA 174 0.5172 MLLSRCSGGEYGTTAAAAYPSAAFNNNNRVFECKTCNRQFSSFQALGGHRASHKKSN. 58
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04009 57 ProSitePatterns Zinc finger C2H2 type domain signature. 33 53 IPR013087 -
Seca5g04009 57 Gene3D Classic Zinc Finger 26 51 - -
Seca5g04009 57 SUPERFAMILY beta-beta-alpha zinc fingers 27 55 IPR036236 -
Seca5g04009 57 Pfam C2H2-type zinc finger 30 55 - -
Seca5g04009 57 PANTHER ZINC FINGER PROTEIN ZAT5 22 56 - -
Seca5g04009 57 ProSiteProfiles Zinc finger C2H2 type domain profile. 31 57 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04009 Seca-Chr5 97281178 97281351 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04009 26 55 C2H2 Transcription Factor Family AT3G53600 83.333 1.94e-13 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca5g04009 zf-C2H2_6 4.2e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04009 - - psat:127098085 69.3218