Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04000 ATGCGGGATACTGAGAAGTTAAATAACAGAGGATCTACAAAATCATGTAACTCAAAGGAACATACAGAGTCAAAGATAGATTCAGTGAAATACAAAACGAGTAGCACAAAATGCCGAGGTAAGAAACACAAATTGAAATCAAAATCTCATGAACTCAGAGGTTGCGCAAATGCATCAGGGAAGACAGTTATGGATTCTTCTATCAAGATACAGGGAGGAAAATTTTCTCTTAGTTATAGGAAAGCAGGGAAAGATGATGACGGGGAGGCAAAGATTCAAAAACGTAAGAGAAAGAGAAAGAAGAAAAGACAAAGGGATAACGTGAATCTTGATGATACTGCGCGCCTGCTGAGAAGAACAAGATATCTCTTAATCAAGACAAAGCTAGAGCAGAATCTTATTGATGCTTACTCTGGAGAAGGTTGGAAAGGTCAAAGTCGAGAGAAGATTAGGCCAGAAAGGGAGCTACAAAGAGCAAAGAAGCAGATTTTAAAATGTAAACTTAGTATCCGTGATGCCATTCGCCAGCTGGATTCTCTTAGTTCAGTGGGTTGCATTGAAGAATCTGTTATTGCTCCAGATGGATCTGTTTATCATGAACATATATTCTGTGCAAATTGCAAGTTGCACGAAGCTTTCCCAGATAATGACATTATACTCTGTGATGGCACATGCAATCGTGCTTTTCACCAAAGATGTCTTGATCCTCCTTTGGATACTGAAAATATTCCTCCTGGAGACCAAGGCTGGTTTTGCAAGTTTTGTGAATGTAAGATAGAAATACTGGAGGCAACAAATGCTCATCTTGGAACTCAATTCTCCTTGGACAGTACTTGGCAGGATGTATTCAATGAAGAGGCTGCTATACCTGATGGTGATGCTGGGTTGCTAAATCAAGAAGAAGAATGGCCATCAGATGATCCAGAAGATGATGACTATAATCCAGAGAGAAAAGAAGACAGCCATAGCATCAAGACAGAAGGAACTGACAATAGTGTATCTGATGATTTAAGCAGTTCTTCCAATTTGTGTTCTTTGAATGGTGATGAAGGCATCAGCCTTGAATATTATTCTGTTAATAGCTGCATAGATTCTGATGAGTCTGGGGAAATAGCATGTGGCCGTAGGCAGCGTAAAGCTGTTGACTACAAGAAACTTTATGATGAAATGTTTGGGAAGGATGCTCCTCAATGTGAACAAGTGAGTGAAGATGAGGACTGGGGTCCTGGCAAAAGAAAGCGAAGAGAAAAGGAGTCTGATGCTGTTAATACTCTTATGACTCTACATGAAAGTGAGAATAAATATCCCAATAATGAGAACAGTGGTAGAATAAAAGAGGGTTCTTCAGGCATAAGAATAAGAAGACCTTGTTTCAGGATTCCACATGACGCAGTTGAGAAGCTACGCCAAGTTTTTGCAGAGAATGAGCTTCCTCCAAGATCTGTGAGGGAAAGTCTGTCAAAAGAGCTGGGACTTGATTCTGTGAAGGTTAGCAAATGGTTCAAAAATGCACGTTACATGGCACTCAAAACTAGAAAGTGTCAAGCAGAAGGGGGACAACAGCTTCAGAGTCTCACTTCTAAGACTTCAAAGGATTCTGGATCACAAAATGTGGAGAAAGATGAGCTTTTGAAATCAAAGGCCTCGAAAATTACCGTGATTAATTCCCAGAAGAATGGTAAAAATGTCACTGGCAAAGAGAAAATAAAGGCATCTAGCAGTCCTTTGAAGGAAAGGCAACCAGAAATATCTGCACCCTTAAGAGAAAATGGCAACAAGGACTCCATGGAGGTCAGTGGTGGTGATGTTAGCTTGAAGAAACTGTTGAAAGAAAAGAAAAGGAGGGTAACTTTTATATTTGAAGGAGACTCTGAGGCAGCAGAGTTGGAATTTGAAAGACTCAGCAAAGTGAAGATGAAACTAGATAGAATGAAGCAAAAATTAACTCAAGTTCAAAATTACAGAGCAAAGGGTTCAAATGAACCTTCTATTATATATGTACCTACAGCTGAGTTGAGGGAAAAGGTTGAATAA 2034 0.3963 MRDTEKLNNRGSTKSCNSKEHTESKIDSVKYKTSSTKCRGKKHKLKSKSHELRGCANASGKTVMDSSIKIQGGKFSLSYRKAGKDDDGEAKIQKRKRKRKKKRQRDNVNLDDTARLLRRTRYLLIKTKLEQNLIDAYSGEGWKGQSREKIRPERELQRAKKQILKCKLSIRDAIRQLDSLSSVGCIEESVIAPDGSVYHEHIFCANCKLHEAFPDNDIILCDGTCNRAFHQRCLDPPLDTENIPPGDQGWFCKFCECKIEILEATNAHLGTQFSLDSTWQDVFNEEAAIPDGDAGLLNQEEEWPSDDPEDDDYNPERKEDSHSIKTEGTDNSVSDDLSSSSNLCSLNGDEGISLEYYSVNSCIDSDESGEIACGRRQRKAVDYKKLYDEMFGKDAPQCEQVSEDEDWGPGKRKRREKESDAVNTLMTLHESENKYPNNENSGRIKEGSSGIRIRRPCFRIPHDAVEKLRQVFAENELPPRSVRESLSKELGLDSVKVSKWFKNARYMALKTRKCQAEGGQQLQSLTSKTSKDSGSQNVEKDELLKSKASKITVINSQKNGKNVTGKEKIKASSSPLKERQPEISAPLRENGNKDSMEVSGGDVSLKKLLKEKKRRVTFIFEGDSEAAELEFERLSKVKMKLDRMKQKLTQVQNYRAKGSNEPSIIYVPTAELREKVE. 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04000 677 SUPERFAMILY FYVE/PHD zinc finger 195 260 IPR011011 -
Seca5g04000 677 ProSiteProfiles 'Homeobox' domain profile. 451 511 IPR001356 GO:0003677
Seca5g04000 677 MobiDBLite consensus disorder prediction 555 569 - -
Seca5g04000 677 MobiDBLite consensus disorder prediction 516 533 - -
Seca5g04000 677 FunFam pathogenesis-related homeodomain protein 453 517 - -
Seca5g04000 677 ProSitePatterns Zinc finger PHD-type signature. 204 255 IPR019786 -
Seca5g04000 677 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 14 675 - -
Seca5g04000 677 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 195 252 IPR013083 -
Seca5g04000 677 MobiDBLite consensus disorder prediction 35 49 - -
Seca5g04000 677 CDD homeodomain 452 506 IPR001356 GO:0003677
Seca5g04000 677 SUPERFAMILY Homeodomain-like 450 511 IPR009057 -
Seca5g04000 677 Pfam Homeodomain 462 506 IPR001356 GO:0003677
Seca5g04000 677 ProSiteProfiles Zinc finger PHD-type profile. 201 258 IPR019787 -
Seca5g04000 677 SMART PHD_3 203 256 IPR001965 -
Seca5g04000 677 MobiDBLite consensus disorder prediction 396 420 - -
Seca5g04000 677 Pfam PHD-finger 203 258 IPR019787 -
Seca5g04000 677 Gene3D - 451 515 - -
Seca5g04000 677 MobiDBLite consensus disorder prediction 555 600 - -
Seca5g04000 677 MobiDBLite consensus disorder prediction 16 34 - -
Seca5g04000 677 MobiDBLite consensus disorder prediction 513 542 - -
Seca5g04000 677 MobiDBLite consensus disorder prediction 300 314 - -
Seca5g04000 677 MobiDBLite consensus disorder prediction 290 339 - -
Seca5g04000 677 CDD PHD_PRHA_like 203 255 IPR045876 -
Seca5g04000 677 FunFam pathogenesis-related homeodomain protein-like 195 255 - -
Seca5g04000 677 MobiDBLite consensus disorder prediction 80 107 - -
Seca5g04000 677 SMART HOX_1 453 515 IPR001356 GO:0003677
Seca5g04000 677 MobiDBLite consensus disorder prediction 1 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04000 Seca-Chr5 97160332 97168987 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04000 103 516 Homeobox Transcription Factor Family AT4G29940 57.710 7.20e-158 472
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Seca5g04000 Homeodomain 1.5e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04000 - - gmx:100787118 986.097