Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03997 ATGACGGAGCAGACCAAGGTCAGCGTGCTGTGCAGCCTGTTCACGTGGACGCAGAGAAGCAAGTCGCCGGCGAAGAAGCGGTCCAAGTTCCGCAAGTTCCTCGATTCCTTCTGCAAAGACGGCAACTACTTCCCCGCCATTCGCCTCATTCTCCCTAACCTCGATCGCGAGCGAGGCTCCTATGGCCTCAAGGAATCCGTTCTCGCCACTTCCCTCATCGACGCTCTCGGCATGTCTAGGGACTCTCACGACGCCCTTCGCCTCATCAATTGGCGCAAAGGCGGTGCCAAAACCGGTGTCAATGCCGGTAATTTTGCCCTTGTCGCCACCGAGGTGCTGCAGAGTAGACAAGGGACGGCTTCGGGTGGGTTGACAATAAAGGAGTTGAATGACTTGCTTGATCAGTTGTCTTCGAGTGAAAACAGGGCTGAGAAGACTTTGGTTCTTTCTACCCTTATCCAAAAGACAAATGCGCAGGAAATGAAGTGGATTATCATGATAATCCTGAAAGATCTGAAGCTGGGAATCAGTGAAAAAAGCATTTTTCATGAATTCCATCCAGATGCTGAAGACTTGTTTAATGTTACATGTGACTTAAAATTAGTTTGTGAAAAGCTAAGGGATCGGAATCAACGTCACAAGCGGCAGGATATTGAAGTTGGAAAAGCTGTGCGCCCTCAATTAGCTAAAAGAATTGCTAATGCAACTGAAGCATGGAAGAAGCTTCATGGGAAGGAAGTGGTTGTTGAATGCAAATTCGATGGTGATCGCATTCAAATTCATAAGAATGGAAAAGAGATACATTTCTTCTCAAGGAACTTTCTTGATCATTCTGAATATGCACCTGCGATGTCAGAAATTATAATACAAAACATTCTTGTAGATAGGTGCATACTTGATGGTGAAATGTTGGTCTGGGACACATCATTGAATCGTTTTGCTGATTTTGGCTCAAATCAGGAAATAGCCAAGGCAGCAAGGGATGGACTTGATAGTGATAGACAGTGGTTAGATGTTGCATTTGATATCCTTTATTTTGGAGATACTAGTGTAATTCACCAAACATTGAAGGAACGACATGAGATTCTCCATAAAGTTGTGAGGCCAGTAAAGGGTCATTTGGAGATTTTAGTACCTAATGGTGGTATCAACAGTCACCGTTCTTCTGGCGAACCATGTTGGTCATTTATTGCTCATAATGTGGATGAAGTTGAGAAGTTTTTCAAAGAAACCATTGAAAACAGAGATGAGGGAATTGTTTTAAAAGACCTTGGTTCCAAATGGGAACCTAGTGATCGTAGTGGAAAGTGGCTAAAATTGAAGCCCGAATACATTCAAGCTGGCTCTGATCTTGATGTACTTATCATAGGTGGATACTATGGTTCTGGACGACGTGGAGGAGAGGTTGCTCAGTTCTTGGTGGGCCTTGCAGAACGTCCTTCCCCAAATACACATCCCAAGCGATTTATCTCCTTTTGCAGAGTTGGTACTGGACTTTCTGATGATGAGCTTGATGCTGTTGTAACCAAACTAAAACCTTACTTCAGAAAGTATGAATATCCAAAGAAGAGGCCACCCAGTTTTTATCAAGTTACTAATCATTCAAAAGAAAGACCTGATGTGTGGGTTGATAGCCCTGAAAAATCAATTGTTCTCTCTATAACCAGTGATATCCGAACTATAGAATCTGATGTCTTTTCTGCACCTTACAGCCTGAGATTTCCTCGGATTGACAGGGTGAGATATGACAAGGCTTGGTACGAATGCCTTGATGTGCAATCATTTATAGAACTAGTGCATTCTAGCAATGGTACCACACAGAGGGATACAGAATATGGCAGCAAGCAGGACAGTAAACCAAAACGCATGAAATCCTCCATAAGGGGAGAAAAGAAAGACATGTCCATTGTTCCTTCTCATTTAATTCAAACTGATGTTTCCAGTGTTAAGGGAGGTTCCTTAATATTTTCAAATATGATGTTTTACTTTGTTAATGTTCCTACATCTCATTCCCTCGAGTCCATGCACAAAATAATTGCTGAGAATGGGGGAACTTTCTCGATGAATTTGAATAACTCAGTCACCCATTGTGTTGCAGCAGACAGCAAGGGGTTTAAATTTGAAGCAGCAAAACTTCACGGTGATATCATTCATTACACTTGGGTATTAGATTGCTGTGCACAAAAGAAGCTTGTCCGCTTACAGCCCAAGTACTTCCTGTTCCTATCTGAACTGACAAAGAAGAAGTTACAAGAAGAAATTGATGAGTTCTCAGACTCTTACTACTTGGATCTTGATCTTGTAGACATCAAACAGCTCTTAAGCAATATTCATAGGTCAGAAGATGTCAGCACTGTTAATCATTACAGGAAAAAATACTGCCCAAAGGATAAGTGGTCTTCCTTTAATGGATGCTCCATCTATTTCCACACTGTAATGCCATCATTGAAAGAAGATTGGGAATTTCTTTTGGGACTTGCTTTGAGGAGATTCAAGCTTGAAGTTCTAATGGGTGGTGGAAAAGTTACCTCTAATCTTAGTTGTGCAACTCATTTAGTGGCCTTGTTTGTGCCAAGATGTCATACCAACTTTGAAGAAGAAATACAGAGTAGGTAA 2616 0.4197 MTEQTKVSVLCSLFTWTQRSKSPAKKRSKFRKFLDSFCKDGNYFPAIRLILPNLDRERGSYGLKESVLATSLIDALGMSRDSHDALRLINWRKGGAKTGVNAGNFALVATEVLQSRQGTASGGLTIKELNDLLDQLSSSENRAEKTLVLSTLIQKTNAQEMKWIIMIILKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLRDRNQRHKRQDIEVGKAVRPQLAKRIANATEAWKKLHGKEVVVECKFDGDRIQIHKNGKEIHFFSRNFLDHSEYAPAMSEIIIQNILVDRCILDGEMLVWDTSLNRFADFGSNQEIAKAARDGLDSDRQWLDVAFDILYFGDTSVIHQTLKERHEILHKVVRPVKGHLEILVPNGGINSHRSSGEPCWSFIAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPSDRSGKWLKLKPEYIQAGSDLDVLIIGGYYGSGRRGGEVAQFLVGLAERPSPNTHPKRFISFCRVGTGLSDDELDAVVTKLKPYFRKYEYPKKRPPSFYQVTNHSKERPDVWVDSPEKSIVLSITSDIRTIESDVFSAPYSLRFPRIDRVRYDKAWYECLDVQSFIELVHSSNGTTQRDTEYGSKQDSKPKRMKSSIRGEKKDMSIVPSHLIQTDVSSVKGGSLIFSNMMFYFVNVPTSHSLESMHKIIAENGGTFSMNLNNSVTHCVAADSKGFKFEAAKLHGDIIHYTWVLDCCAQKKLVRLQPKYFLFLSELTKKKLQEEIDEFSDSYYLDLDLVDIKQLLSNIHRSEDVSTVNHYRKKYCPKDKWSSFNGCSIYFHTVMPSLKEDWEFLLGLALRRFKLEVLMGGGKVTSNLSCATHLVALFVPRCHTNFEEEIQSR. 872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03997 871 SMART BRCT_7 653 729 IPR001357 -
Seca5g03997 871 MobiDBLite consensus disorder prediction 605 629 - -
Seca5g03997 871 PANTHER DNA LIGASE 4 3 866 IPR029710 GO:0003677|GO:0003910|GO:0005524|GO:0006281|GO:0051103
Seca5g03997 871 CDD Adenylation_DNA_ligase_IV 214 446 IPR044125 GO:0005524
Seca5g03997 871 ProSiteProfiles BRCT domain profile. 651 739 IPR001357 -
Seca5g03997 871 Pfam BRCT domain, a BRCA1 C-terminus domain 653 736 IPR001357 -
Seca5g03997 871 FunFam DNA ligase 1 218 - -
Seca5g03997 871 FunFam DNA ligase 220 443 - -
Seca5g03997 871 CDD BRCT_DNA_ligase_IV_rpt1 655 741 - -
Seca5g03997 871 MobiDBLite consensus disorder prediction 612 629 - -
Seca5g03997 871 Gene3D - 1 218 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Seca5g03997 871 Gene3D DNA ligase/mRNA capping enzyme 220 443 - -
Seca5g03997 871 CDD OBF_DNA_ligase_IV 448 592 - -
Seca5g03997 871 Gene3D BRCT domain 665 779 IPR036420 -
Seca5g03997 871 Gene3D - 444 605 IPR012340 -
Seca5g03997 871 Pfam ATP dependent DNA ligase domain 226 441 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Seca5g03997 871 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 185 442 - -
Seca5g03997 871 FunFam DNA ligase 444 605 - -
Seca5g03997 871 Pfam DNA ligase N terminus 8 186 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Seca5g03997 871 FunFam DNA ligase 666 780 - -
Seca5g03997 871 NCBIfam ATP-dependent DNA ligase 61 599 IPR000977 GO:0003910|GO:0005524|GO:0071897
Seca5g03997 871 SUPERFAMILY BRCT domain 655 740 IPR036420 -
Seca5g03997 871 Pfam ATP dependent DNA ligase C terminal region 465 584 IPR012309 GO:0003910|GO:0006281|GO:0006310
Seca5g03997 871 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 250 258 IPR016059 GO:0003909
Seca5g03997 871 ProSiteProfiles ATP-dependent DNA ligase family profile. 340 478 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Seca5g03997 871 Coils Coil 126 146 - -
Seca5g03997 871 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 102 209 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Seca5g03997 871 SUPERFAMILY Nucleic acid-binding proteins 449 600 IPR012340 -
Seca5g03997 871 ProSitePatterns ATP-dependent DNA ligase signature 2. 417 441 IPR016059 GO:0003909
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03997 Seca-Chr5 97125039 97142436 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03997 214 601 Core DNA Replication Machinery Family AT1G08130 27.295 2.22e-30 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03997 K10777 - gmx:100816002 1568.9