Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03996 ATGGAGAATATTGGTGACGAATACAAACATTACTGGGAAACCAACATGTTCCTCCAAACCCAAGAGATTGACAGCTGGGGATTAGATGAGGCGTTATCAGGGTACTATGATTCAAGCTCCCCAGACGGTGCTGCTTCCTCTGCAGCGTCTAAGAACATTATGTCAGAGAGGAATAGGAGGAAGAAGCTCAATGAAAGGCTCTTTGCCCTTAGATCAGTGGTCCCCAACATTAGCAAGATGGATAAGGCATCGATTATTAAGGATGCTATTGAGTACATACAGCACTTGCATGAGCAAGAGAAGATGATCCAAGCTGAGATAATGGAGCTTGAATCTGGGATGCCAAAGAATATCAATAACAATCCAACCTATGACTTTGAGCAGGACCTTCCTGTGCTTCTGAGGTCCAAGAAGAAGAGAACAGAGCACCTATATGATTCTGTCACTTCAAGAAACTCCCCATTTGAAGTCCTTGAGCTGCGGGTAACATACATGGGAGAGAAGACTGTTGTGGTGAGTTTGACATGTAGCAAAAGGACAGACACAATGGTGAAACTGTGCGAGGTGTTTGAATCTTTGAAGCTCAAGATAATTACTGCTAATATCACTTCATTTTCAGGCAGGCTTTTGAAGACAGTCTTCATTGAGGCAAATGAAGAAGAGAAAGATCTTTTGCACATAAAGATCCAAACGGCAATTGCAGCTCTTAATGATCCTCTAAGCCCTATGAGTATCTGA 738 0.4268 MENIGDEYKHYWETNMFLQTQEIDSWGLDEALSGYYDSSSPDGAASSAASKNIMSERNRRKKLNERLFALRSVVPNISKMDKASIIKDAIEYIQHLHEQEKMIQAEIMELESGMPKNINNNPTYDFEQDLPVLLRSKKKRTEHLYDSVTSRNSPFEVLELRVTYMGEKTVVVSLTCSKRTDTMVKLCEVFESLKLKIITANITSFSGRLLKTVFIEANEEEKDLLHIKIQTAIAALNDPLSPMSI. 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03996 245 Gene3D - 44 112 IPR036638 GO:0046983
Seca5g03996 245 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 46 230 - -
Seca5g03996 245 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 47 96 IPR011598 GO:0046983
Seca5g03996 245 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 43 113 - -
Seca5g03996 245 Pfam Helix-loop-helix DNA-binding domain 52 97 IPR011598 GO:0046983
Seca5g03996 245 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 48 113 IPR036638 GO:0046983
Seca5g03996 245 SMART finulus 53 102 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03996 Seca-Chr5 97113654 97120598 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03996 1 216 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 65.297 2.64e-88 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca5g03996 HLH 1.6e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03996 - - gmx:100817978 424.861