Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03993 ATGGCGGGGAAGGTGTCAAAGGCAGCTTACGATGCAAAGATGTGGAAGCTTCTGCGAGAGTACAGCCAGGTACTGGTGGTTTCATCGGATAATGTGGGGTCGAACCAGCTTCAGGGGATACGAAGGGCACTCCATGCTGACTCGGTGGTAGTGATGGGGAAGAACTCATTGATGAAGCGCTCTATCATTGAGGATGCTCAGAAAACTGGGAATAAAGCCTTCCTTAACCTAGTTCCCCTCCTTGTGGGGAACGTGGCATTGATTTTCACCAAAGGTGACTTGAGGGAGGTTAGCGAACGGATTGCCAAGTACAAGGTTGTAAATCCTATTCTCATGTGCCCTAAGTACATGTCATATGACTCATACCGCACTTGTTCCTATATGCAATCTGGACAGTTACCTTTGGGCCTAACATGTTGTAACCAGCAATCTTCGCAGGCTTCTGAGCCATTTCTTGTATGCTCAAAATTCTCGCCACAACAGCACTGTTTCTTGATGAGATCGAGACAATTCTTGATGACGAGCATATGGGCTCCTTTTCTTCTTTTGGCTGGCAACTTGTGA 564 0.4716 MAGKVSKAAYDAKMWKLLREYSQVLVVSSDNVGSNQLQGIRRALHADSVVVMGKNSLMKRSIIEDAQKTGNKAFLNLVPLLVGNVALIFTKGDLREVSERIAKYKVVNPILMCPKYMSYDSYRTCSYMQSGQLPLGLTCCNQQSSQASEPFLVCSKFSPQQHCFLMRSRQFLMTSIWAPFLLLAGNL. 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03993 187 Gene3D - 4 124 IPR043141 -
Seca5g03993 187 Pfam Ribosomal protein L10 6 104 IPR001790 -
Seca5g03993 187 SUPERFAMILY Ribosomal protein L10-like 7 108 IPR043141 -
Seca5g03993 187 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P0 5 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03993 Seca-Chr5 97088085 97092337 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03993 1 156 Cytoplasmic Ribosomal Protein Gene Family AT2G40010 48.824 1.79e-43 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03993 K02941 - mnt:21409050 152.91