Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03986 ATGTCCAGGGAGTATAGCCTTATACTGTTTTATTTCTTTCGGCTGCAGATCTTTAATGGCGTCTTTCTCAAAGTCAACAAAGCAACCATGAATATGCTACACAGGGTAGAGCCTTATGTCACCTATGGTTACCCTAATTTGAAGAGTGTCAGAGAGTTGATCTACAAAAGGGGCTACGGAAAAGTTAATAAGCAGAGAATTGCTTTGACAGACAACTCTATTATTGAACAGACTCTGGGGAAGCTTGGTATTATCTGCATTGAAGATCTGATCCATGAGATCATGACTGTTGGACCTCACTTCAGGGAGGCAAATAACTTCCTATGGCCTTTCAAGCTCAAAGCTCCCCTGGGAGGTTTGGAGAAGAAAAGAAATCACTATGTTGAAGGAGGTGATGCTGGTAATAGGGAAGATTACATAAATGAGCTTATTAGAAGGATGAATTAG 447 0.4072 MSREYSLILFYFFRLQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKVNKQRIALTDNSIIEQTLGKLGIICIEDLIHEIMTVGPHFREANNFLWPFKLKAPLGGLEKKRNHYVEGGDAGNREDYINELIRRMN. 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03986 148 CDD Ribosomal_L7_archeal_euk 13 148 IPR035808 -
Seca5g03986 148 FunFam 60S ribosomal protein L7 94 148 - -
Seca5g03986 148 Pfam Ribosomal protein L30p/L7e 16 40 IPR016082 -
Seca5g03986 148 Gene3D - 94 148 IPR036919 -
Seca5g03986 148 Gene3D - 8 93 IPR036919 -
Seca5g03986 148 PANTHER 60S RIBOSOMAL PROTEIN L7 12 148 IPR039699 -
Seca5g03986 148 FunFam 60S ribosomal protein L7 1 93 - -
Seca5g03986 148 SUPERFAMILY Ribosomal protein L30p/L7e 16 148 IPR036919 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03986 Seca-Chr5 96992408 96994094 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03986 9 148 Cytoplasmic Ribosomal Protein Gene Family AT2G44120 84.397 5.13e-88 255
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03986 K02937 - mof:131152931 270.396