Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03985 ATGGCCAAAGAGGAAGCGAAAGCGGTGGTTCCTGAATCTGTATTGAAGAAGCAGAAAAGGAACGAGGAGTGGTCTTTGGCTAAAAAGCAGGAACTGGAAGCCGCGAAGAAGAAAAGGTCTGAAACTCGGAAACTGATTTGGAGCAGAGCCAAACAGTACTCAAAGGAATACGATGACCAGCAAAAGGAGCTGATTAGGTTGAAGCGTGAGGCCAAGCTTAAGGGCGGGTTTTATGTCGACCCTGAAGCTAAGCTCTTGTTTATCATCAGGATCCGTGGTATCAATGCCATGCATCCAAAAACAAGGAAGATTTTGCAGCTTCTGCGTTTGAGACAGGTAAACTTAAAATACAAATTGAGATTTTATTTTTATTAG 375 0.432 MAKEEAKAVVPESVLKKQKRNEEWSLAKKQELEAAKKKRSETRKLIWSRAKQYSKEYDDQQKELIRLKREAKLKGGFYVDPEAKLLFIIRIRGINAMHPKTRKILQLLRLRQVNLKYKLRFYFY. 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03985 124 Gene3D - 85 119 IPR036919 -
Seca5g03985 124 Pfam Ribosomal protein L30p/L7e 86 114 IPR016082 -
Seca5g03985 124 PANTHER 60S RIBOSOMAL PROTEIN L7 8 114 IPR039699 -
Seca5g03985 124 Coils Coil 50 70 - -
Seca5g03985 124 Pfam Ribosomal L30 N-terminal domain 10 81 IPR012988 -
Seca5g03985 124 SUPERFAMILY Ribosomal protein L30p/L7e 85 114 IPR036919 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03985 Seca-Chr5 96991033 96991778 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03985 1 113 Cytoplasmic Ribosomal Protein Gene Family AT3G13580 78.761 7.80e-58 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03985 K02937 - gmx:100306213 187.193