Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03984 ATGAGTTTCCTGAATGGTTCTTCACCTCGCCGGCCAGCGGCAGAGAATGATATAGAAGCTGGTCCAGCGAGTCGACGCTCTTCCGACGTCGACGACAGTGATTTCTCCTCTCCGTTTGATATTGCCAGAACCAAGAACGCTTCGATTGAACGACTAAGGCGGTGGAGGCAAGCGGCACTTGTGCTAAATGCTTCTCGTCGATTTCGTTATACCTTGGACTTGAAAAAAGAAGAAGAGAAGAAACAAATATTGAGAAAGATTAGAGCGCATGCACAGGCCATTAGAGCAGCATATCTTTTCAAAGCAGCCGGGGGGCAAGTGAGTGAAACTATAAAACCTCCTTCGACCTCCACTGGTGAATTTCCAATTGGACAAGAGCAACTTGCTTCAATTTCAAGGGAGCATGATGCTGCTGCTTTGCAGCAATATGGAGGGGTTGCAGGGATATCAAATTTATTGAAAACCAATTTAGAGAAGGGGATTCATGGTGATGATGCTGACTTATCAAGACGGAGGACTGCATTTGGTTCCAACAATTATCCTCGAAAGAAAGGAAGAAGTTTTTGGATGTTTATGTGGGATGCTTGCAAGGATCTGACCTTGGTTATTTTAATGGTAGCTGCAGCAGCTTCATTGGCACTGGGGATAAAATCTGAGGTGAGATTAGCTGAAAAAGTTATGATGCAGGGTATTAAGGAAGGATGGTATGATGGGGGAAGCATTGCTTTTGCAGTTATTCTTGTTATTGTTGTTACAGCTATAAGTGATTACAAGCAGTCCCTTCAGTTTCGAGACCTAAATGAAGAGAAGAGAAATATACACCTTGAGGTTATTAGAGGTGGTAGAAGGGTTGAGATCTCGATATATGATATTGTTGTTGGGGATGTTATACCCCTTAATATTGGTAACCAGGTCCCTGCTGATGGAATTCTGATCACTGGTCACTCTCTTGCAATTGATGAATCAAGCATGACGGGGGAGAGTAAAATTGTCCATAAGGATTCTAAAGATCCTTTCCTGATGTCTGGATGTAAAGTTGCAGATGGCAGTGGCACTATGCTGGTAACGGGTGTTGGTATTAATACTGAATGGGGACTTCTAATGGCTAGCATTTCAGAAGATACTGGTGAAGAAACACCTTTGCAGGTCCGCTTAAATGGTGTAGCCACCTTTATTGGTATTGTTGGACTCACTGTTGCTGTTGCTGTCCTCATTGTGCTATTGAGCAGATATTTCTCTGGTCATACTAAAAATCCAGATGGGACGGTTCAATTTAAAGCGGGCAAGACTAAAGTTGGTGATGCTATTGATGGAGCCATTAAGATAGTAACTGTTGCGGTCACCATTGTAGTGGTTGCTGTGCCTGAGGGGCTCCCACTTGCAGTTACTTTAACATTGGCCTACTCGATGCGAAAAATGATGGCAGATAAAGCTTTGGTACGGAGGCTTTCTGCCTGTGAGACAATGGGCTCTGCTACAACCATATGCAGTGATAAGACTGGGACATTGACTATGAATCAGATGACTGTAGTTGAGGCTTATGCTGGGGGCAAGAAGATTGATCCTCCTCACCAGTTGGAGGGCTCTCCTATGGTACGCTCCCTGCTCATTGAAGGTGTTGCACAGAACACTAATGGTAGTGTTTTTGTACCTGAGGGTGCTAGTGATGTTGAGGTTTCTGGATCACCAACAGAAAAGGCAATTTTACATTGGGGAATAAAGCTTGGGATGAATTTTGCGGCTGCTCGGTCAGAATCGTCAATTATTCATGTCTTCCCATTCAATTCAGAGAAAAAAAGAGGCGGAGTTGCAATACAGACGGCTGACTCTGATGTCCATATACATTGGAAAGGTGCTGCTGAGATAGTTCTAGCCTGTTGTACAGGGTATATGGATGCAAATGACCAGTTGGTGGAGATGGATGAGGAGAAGTCATTTTTCAGAAAAGCTATTGAAGACATGGCTGCTGATAGTCTACGTTGTGTTGCCATTGCATATAGATCATATGAAAAGGAGAAGGTTCCAACTAATGAAGAACTACTTGCTCACTGGTCTTTACCAGAGGATAATCTTGTTTTACTAGCTATTGTTGGTCTTAAGGATCCTTGTAGACCTGGTGTCAAAGATTCAGTGCAGCTTTGCCAAAAAGCTGGGGTTAAGGTTAAAATGGTCACGGGTGACAATGTCAAAACTGCAAAAGCAATTGCTGTTGAATGTGGAATTCTTAGTTCATATGCGGATGCTACAGAGCCGAACATCATTGAAGGGAAAACATTCCGTGCCTTGTCAGATGCGCAGAGAGAAGAAATTGCTGAAGCAATATCGGTTATGGGACGGTCATCTCCCAATGACAAACTATTGCTAGTACAAGCATTGAGGAGGAAGGGTCATGTTGTGGCTGTAACTGGGGATGGAACGAATGATGCTCCTGCACTTCATGAGGCCGATATAGGTCTTGCAATGGGTATTCAAGGTACAGAAGTCGCCAAAGAGAGCTCTGATATCATTATTTTGGATGACAATTTTGCTTCAGTTGTGAAGGTTGTCAGATGGGGGCGGTCTGTATATGCAAATATTCAGAAATTCATCCAGTTTCAGCTGACAGTCAATGTGGCAGCGCTTGTTATAAATGTTGTTGCTGCAGTTTCCTCTGGTGATGTCCCACTAAATGCAGTGCAGCTTCTCTGGGTAAATCTTATCATGGATACTCTGGGAGCACTAGCCTTGGCAACTGAACCACCAACTGATCACCTGATGGATCGGTCTCCTGTGGGTCGAAGAGAACCTCTCATAACAAATATTATGTGGAGGAATTTGCTGATTCAGGCAATGTATCAAGTGTCTGTCTTGCTTGTTCTCAATTTCCGAGGCAGGAGCATTCTGAGTCTGAGGCATGAGCCCATTGAGCATGCAGTCAAAGTAAAAAACACTTTGATCTTCAATGCATTTGTTCTCTGTCAAATCTTTAATGAATTTAATGCACGAAAGCCAGATGAATTCAACATTTTTAAGGGAGTCACAAGAAACTACCTATTTATGGGGATAGTGGGATTAACTGTTGTGCTTCAGATTATCATCATTGAATTTCTTGGGAAGTTCACTTCAACAGTCAGGTTAAATTGGAAGCAGTGGCTCATCTCTGTCATTATTGGACTTATTAGTTGGCCTCTTGCTGTCGTTGGGAAATTGATACCAGTACCAGCAACTCCCATCAATAACATTTTTTCAAGATTAAATTTTGGTCGAAGTTCAAGAAGGAAGGAACCTGAGGCTTCTCAATAG 3282 0.4305 MSFLNGSSPRRPAAENDIEAGPASRRSSDVDDSDFSSPFDIARTKNASIERLRRWRQAALVLNASRRFRYTLDLKKEEEKKQILRKIRAHAQAIRAAYLFKAAGGQVSETIKPPSTSTGEFPIGQEQLASISREHDAAALQQYGGVAGISNLLKTNLEKGIHGDDADLSRRRTAFGSNNYPRKKGRSFWMFMWDACKDLTLVILMVAAAASLALGIKSEVRLAEKVMMQGIKEGWYDGGSIAFAVILVIVVTAISDYKQSLQFRDLNEEKRNIHLEVIRGGRRVEISIYDIVVGDVIPLNIGNQVPADGILITGHSLAIDESSMTGESKIVHKDSKDPFLMSGCKVADGSGTMLVTGVGINTEWGLLMASISEDTGEETPLQVRLNGVATFIGIVGLTVAVAVLIVLLSRYFSGHTKNPDGTVQFKAGKTKVGDAIDGAIKIVTVAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTMNQMTVVEAYAGGKKIDPPHQLEGSPMVRSLLIEGVAQNTNGSVFVPEGASDVEVSGSPTEKAILHWGIKLGMNFAAARSESSIIHVFPFNSEKKRGGVAIQTADSDVHIHWKGAAEIVLACCTGYMDANDQLVEMDEEKSFFRKAIEDMAADSLRCVAIAYRSYEKEKVPTNEELLAHWSLPEDNLVLLAIVGLKDPCRPGVKDSVQLCQKAGVKVKMVTGDNVKTAKAIAVECGILSSYADATEPNIIEGKTFRALSDAQREEIAEAISVMGRSSPNDKLLLVQALRRKGHVVAVTGDGTNDAPALHEADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMDRSPVGRREPLITNIMWRNLLIQAMYQVSVLLVLNFRGRSILSLRHEPIEHAVKVKNTLIFNAFVLCQIFNEFNARKPDEFNIFKGVTRNYLFMGIVGLTVVLQIIIIEFLGKFTSTVRLNWKQWLISVIIGLISWPLAVVGKLIPVPATPINNIFSRLNFGRSSRRKEPEASQ. 1094
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03984 1093 Pfam Ca2+-ATPase N terminal autoinhibitory domain 37 79 IPR024750 GO:0005516
Seca5g03984 1093 PRINTS Sodium/potassium-transporting ATPase signature 489 510 - -
Seca5g03984 1093 PRINTS Sodium/potassium-transporting ATPase signature 239 259 - -
Seca5g03984 1093 PRINTS Sodium/potassium-transporting ATPase signature 614 632 - -
Seca5g03984 1093 FunFam Calcium-transporting ATPase 506 702 - -
Seca5g03984 1093 FunFam Calcium-transporting ATPase 251 372 - -
Seca5g03984 1093 NCBIfam calcium-translocating P-type ATPase, PMCA-type 134 1066 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Seca5g03984 1093 SFLD Haloacid Dehalogenase 478 854 - -
Seca5g03984 1093 FunFam Calcium-transporting ATPase 9 plasma membrane-type 350 520 - -
Seca5g03984 1093 ProSitePatterns E1-E2 ATPases phosphorylation site. 498 504 IPR018303 -
Seca5g03984 1093 SUPERFAMILY Calcium ATPase, transmembrane domain M 143 1066 IPR023298 -
Seca5g03984 1093 FunFam Calcium-transporting ATPase 696 847 - -
Seca5g03984 1093 SFLD p-type atpase 478 854 IPR044492 -
Seca5g03984 1093 FunFam Calcium-transporting ATPase 819 1068 - -
Seca5g03984 1093 SMART Cation_ATPase_N_a_2 142 216 IPR004014 -
Seca5g03984 1093 MobiDBLite consensus disorder prediction 1 37 - -
Seca5g03984 1093 Pfam Cation transporting ATPase, C-terminus 887 1064 IPR006068 -
Seca5g03984 1093 CDD P-type_ATPase_Ca_PMCA-like 168 935 - -
Seca5g03984 1093 FunFam Calcium-transporting ATPase 47 103 - -
Seca5g03984 1093 Gene3D - 506 702 IPR023299 GO:0000166
Seca5g03984 1093 Pfam Cation transporter/ATPase, N-terminus 144 211 IPR004014 -
Seca5g03984 1093 Gene3D - 194 1055 - -
Seca5g03984 1093 NCBIfam HAD-IC family P-type ATPase 437 519 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca5g03984 1093 NCBIfam HAD-IC family P-type ATPase 768 882 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca5g03984 1093 Gene3D - 493 847 IPR023214 -
Seca5g03984 1093 SUPERFAMILY Calcium ATPase, transduction domain A 274 369 IPR008250 -
Seca5g03984 1093 PRINTS P-type cation-transporting ATPase superfamily signature 695 706 - -
Seca5g03984 1093 PRINTS P-type cation-transporting ATPase superfamily signature 802 821 - -
Seca5g03984 1093 PRINTS P-type cation-transporting ATPase superfamily signature 320 334 - -
Seca5g03984 1093 PRINTS P-type cation-transporting ATPase superfamily signature 496 510 - -
Seca5g03984 1093 PRINTS P-type cation-transporting ATPase superfamily signature 826 838 - -
Seca5g03984 1093 PRINTS P-type cation-transporting ATPase superfamily signature 717 727 - -
Seca5g03984 1093 Pfam E1-E2 ATPase 274 474 - -
Seca5g03984 1093 SUPERFAMILY HAD-like 494 907 IPR036412 -
Seca5g03984 1093 Gene3D - 47 102 - -
Seca5g03984 1093 MobiDBLite consensus disorder prediction 22 37 - -
Seca5g03984 1093 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 502 707 IPR023299 GO:0000166
Seca5g03984 1093 Gene3D - 166 372 - -
Seca5g03984 1093 PANTHER CATION TRANSPORTING ATPASE 110 1066 - -
Seca5g03984 1093 Pfam haloacid dehalogenase-like hydrolase 493 816 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03984 Seca-Chr5 96946870 96967082 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03984 1 1092 Primary Pumps ATPases AT5G57110 73.699 0.0 1613
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03984 K01537 - gmx:100792945 1874.37