Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03966 ATGCAGGCTCAGAAACGGGCACTTGCTGAGCAATTGAATTTAAAGCATAGACAGGTTGAAGTTTGGTTCCAGAACAGAAGAGCAAGGACCAAGCTGAAACAAACAGAGGTGGATTGTGAGTTTTTGAAGAAATGCTGTGAAAAACTAACTGAGGAGAACCTAAGGTTGAAGAAGGAATTGCAAGAGCTGCGTGCATTAAAAGTTGGACCATTCTCGAAGGGTGCAAACTGGACCGTTTGTTCATCATGTGAGAAACTATTGAAGCCTAATGAAGGAAACATTGCCACCATTTCTAATGTGGTCCGAAACAACACCGCAAAATACTGCACATCAGCAAAATAG 342 0.4211 MQAQKRALAEQLNLKHRQVEVWFQNRRARTKLKQTEVDCEFLKKCCEKLTEENLRLKKELQELRALKVGPFSKGANWTVCSSCEKLLKPNEGNIATISNVVRNNTAKYCTSAK. 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03966 113 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 3 92 - -
Seca5g03966 113 Coils Coil 32 66 - -
Seca5g03966 113 SUPERFAMILY Homeodomain-like 4 42 IPR009057 -
Seca5g03966 113 CDD homeodomain 2 34 IPR001356 GO:0003677
Seca5g03966 113 Pfam Homeobox associated leucine zipper 33 66 IPR003106 GO:0006355|GO:0043565
Seca5g03966 113 ProSitePatterns 'Homeobox' domain signature. 8 31 IPR017970 GO:0000981|GO:0006355
Seca5g03966 113 ProSiteProfiles 'Homeobox' domain profile. 1 33 IPR001356 GO:0003677
Seca5g03966 113 Pfam Homeodomain 3 31 IPR001356 GO:0003677
Seca5g03966 113 SMART halz 33 76 IPR003106 GO:0006355|GO:0043565
Seca5g03966 113 Gene3D - 1 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03966 Seca-Chr5 96789875 96791221 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03966 4 86 Homeobox Transcription Factor Family AT4G37790 72.414 1.66e-36 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Seca5g03966 HALZ 1.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03966 K09338 - gmx:100790522 169.859