Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03964 ATGGCTACTGCATTGACTGTGCCTAAACATGAACCAAAAACGTCCTCGCTTTCCTCCCCAAGGTTACCTCGCAGAGTACTCCTCCAAGGGGAAGCTCCTTTACCCTATAATGATGAGTCCTCTTTCGGGAACAAACCTCAACCATGGTCCTTCATCCTTGGAGGGATAGTAGTTGTGGCCATATTGTTGATTCTTTTCTTTATATATCGGAAGCGTATCAAACGCCCACCACACTCAAAAGGAAAAACACCTCCAACTATAGAGCACCAAGCGTTTGGGAAATATCTTGAACCTGCAGAGGTGATAAAGATGGTATTTCCACCCAAACAACAACAACAACCTCCAGAATTCTTTAGTGGGAACCTTCCAACAATTAGCTACTTTGACTACCAAACATTGAGGAATGCAACCAAGAATTTTTGTCCTGAAAATCTTCTTGGAAGTGGTGGATTCGGGCCTGTCTACCAGGGAAAGTTGGTAGATGGAAGGATGATTGCAGTGAAGAAATTGTGTCACAACAAATCCCAACAGGGAGAAAGAGAATTTCTGGTAGAGGTGAAAACGATCACTAGTATCCAACACAAAAATCTGGTTCGCCTTATTGGATGCTGCATAGATGGACCTCAAAGGATACTTGTCTATGAATACATGAAGAACAGAAGTTTGGACCTCTTTATATATGGAAACAGTGATCAATTTTTGAATTGGAGCACTAGGTTCCAAATTATTCTTGGAGTAGCACGGGGACTGCAATACCTTCATGAGGATTCACACAAAAGAATTGTTCACAGAGATATCAAAGCAAGCAACATTCTTCTTGATGACAAGTTTCAGGCAAGGATTGGAGACTTTGGACTAGCCAGGTTCTTCCCTGAAGACCAAGCTTATCTTAGCACACAGTTCGCAGGAACATTAGGTTATACAGCTCCTGAATACGCTATTAGAGGAGAACTATCAGAAAAAGCGGATATCTATAGTTTTGGAGTTCTCTTGCTGGAAATAATCTGTTGCAGGAAAAACACAGATCATACTTTACCATCGGAAATGCAGTACCTCCCTGAATATGCATGGAAACTGTATGACAAGTCAAGTATATTGGATATTGTGGATCCAAAGCTGCGAGAACATGGATTTGTAGAAAAGGATGTTATGCAAGCAATCCATGTGGCTTTCTTATGTCTTCAGCCTCATGCACATTTGAGACCCCCCATGTCAGCGATTGTGGCGTTATTGACATTCAAAATTGAAATGGTTACAACACCAATGAGGCCAGCCTTCTTCGATCGGAGGCGCAGAAAGGGTGAAGAGAACCATTCTTTTGAAGCAACATCAGGCTAA 1338 0.42 MATALTVPKHEPKTSSLSSPRLPRRVLLQGEAPLPYNDESSFGNKPQPWSFILGGIVVVAILLILFFIYRKRIKRPPHSKGKTPPTIEHQAFGKYLEPAEVIKMVFPPKQQQQPPEFFSGNLPTISYFDYQTLRNATKNFCPENLLGSGGFGPVYQGKLVDGRMIAVKKLCHNKSQQGEREFLVEVKTITSIQHKNLVRLIGCCIDGPQRILVYEYMKNRSLDLFIYGNSDQFLNWSTRFQIILGVARGLQYLHEDSHKRIVHRDIKASNILLDDKFQARIGDFGLARFFPEDQAYLSTQFAGTLGYTAPEYAIRGELSEKADIYSFGVLLLEIICCRKNTDHTLPSEMQYLPEYAWKLYDKSSILDIVDPKLREHGFVEKDVMQAIHVAFLCLQPHAHLRPPMSAIVALLTFKIEMVTTPMRPAFFDRRRRKGEENHSFEATSG. 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03964 445 CDD STKc_IRAK 146 412 - -
Seca5g03964 445 Gene3D Phosphorylase Kinase; domain 1 110 216 - -
Seca5g03964 445 ProSiteProfiles Protein kinase domain profile. 140 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g03964 445 ProSitePatterns Serine/Threonine protein kinases active-site signature. 261 273 IPR008271 GO:0004672|GO:0006468
Seca5g03964 445 Gene3D Transferase(Phosphotransferase) domain 1 217 420 - -
Seca5g03964 445 SMART serkin_6 140 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g03964 445 FunFam Cysteine-rich receptor-like protein kinase 10 105 216 - -
Seca5g03964 445 Pfam Protein tyrosine and serine/threonine kinase 144 355 IPR001245 GO:0004672|GO:0006468
Seca5g03964 445 MobiDBLite consensus disorder prediction 1 22 - -
Seca5g03964 445 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 52 436 - -
Seca5g03964 445 SUPERFAMILY Protein kinase-like (PK-like) 118 414 IPR011009 -
Seca5g03964 445 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 217 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03964 Seca-Chr5 96772223 96775155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03964 74 427 Receptor kinase-like Gene Family AT1G56120 44.011 1.68e-97 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca5g03964 PK_Tyr_Ser-Thr 3.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03964 - - gmx:100799624 666.381