Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03961 ATGATACCAACTTATCGTTATTCAGTACTATCTTCTCCTATGCTACCTTTAGATCTTAATGAAGAAGATCACACTCACCACCAGTTCTTCAGTACAAATTACCACCAAGCCTCTTCTTCTCTATCATATTCCATACTCTTCAACACGGATCAAGGAGGATCTTACTGTTGGGGACCAAAGCAGTTACAAAGTGATGTTGAAGAGGCCGAGAAGATCGGATCATGGGATCATCCAGCAGTTGAAAAGAATGGAAACGACCTGAAGAAAGAAGATGGTGAAGGTGAGGATTATATGAATTCAATGAAGTGGATGCCTTCAAAGATGAGAATCTTGCGGAGGATGATGCTATCAGATCAAACGTTAACGGCTTCTTCTTCTAATGAAAAGCAAAATTCATCACCACCTCCTCCTCTAGGAATTCAAACAGCCAGCAACAACAATTCTTCAAACAATGCTGTTAGGGTTTGTGCTGATTGCCACACCACTAAGACCCCTCTCTGGAGGACTGGACCAACAGGTCCCAAGCAGTCACTTTGCAACGCCTGTGGGATTAGACAAAGGAAAGCAAGACGTGCTGCTGCTGCTGCTGCAAATGGTTCGATTGATCTGGTGAAGGAAAACAAGTTTCAAAGCAAAGGGAAGAAGAGGTCGAAAACTGATGAAGCAAAGTTGCAAAAGAAGCGTAAAGTACTTGGAAGGAAGCCAAACAAGAACAAGTTTAGTTTTGAGGAATTGAGAATAAGGTTGAGTAACAAGTTGCCTGATCTCCAACAAGTTTTCCCTCAGGATGAGAAGGAGGCTGCCATTCTCCTCATGGCTTTGTCTCATGGTTTCGCTACTTAA 843 0.427 MIPTYRYSVLSSPMLPLDLNEEDHTHHQFFSTNYHQASSSLSYSILFNTDQGGSYCWGPKQLQSDVEEAEKIGSWDHPAVEKNGNDLKKEDGEGEDYMNSMKWMPSKMRILRRMMLSDQTLTASSSNEKQNSSPPPPLGIQTASNNNSSNNAVRVCADCHTTKTPLWRTGPTGPKQSLCNACGIRQRKARRAAAAAANGSIDLVKENKFQSKGKKRSKTDEAKLQKKRKVLGRKPNKNKFSFEELRIRLSNKLPDLQQVFPQDEKEAAILLMALSHGFAT. 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03961 280 ProSiteProfiles GATA-type zinc finger domain profile. 150 187 IPR000679 GO:0006355|GO:0043565
Seca5g03961 280 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 1 278 - -
Seca5g03961 280 MobiDBLite consensus disorder prediction 119 146 - -
Seca5g03961 280 Pfam GATA zinc finger 156 190 IPR000679 GO:0006355|GO:0043565
Seca5g03961 280 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 149 191 - -
Seca5g03961 280 SMART GATA_3 150 202 IPR000679 GO:0006355|GO:0043565
Seca5g03961 280 CDD ZnF_GATA 155 188 IPR000679 GO:0006355|GO:0043565
Seca5g03961 280 Gene3D - 148 194 IPR013088 GO:0006355|GO:0008270
Seca5g03961 280 ProSitePatterns GATA-type zinc finger domain. 156 182 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03961 Seca-Chr5 96748619 96750493 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03961 99 279 C2C2-Gata Transcription Factor Family AT4G26150 35.047 4.56e-29 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Seca5g03961 GATA 6.6e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03961 - - gmx:100792098 243.047