Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03957 ATGAAGACGGGGGTGGTTTTGGCACTGATTCTGCAGCTGGTGAAGTTCTGTATCATTGGTTTTGCTGTGGAAGCGCAAGGACCTGAAGGGCCTTCTATATCCCCATCACCAGCATTCCTTCTAGTTGTTCATCCTAGAGGAGAAGCACCTGGTCCTATCCATCATGGACAGTCATGGGGAAGCAGTGCATCAAGCCCTTCAGAGCCAAATGGGTTTGCTATATCCCCATCTCCAGCAACCTTTCCTGTGGATCCTTCTCCCAGTGAAGCACCTGGTCTTTTACAACCAAATGGGTCATTCTTGCACCCTCCAGTTACATTACCACCTCCTACATCAGCTCCAACTCCTCAGAAGATTAAAGGAATTGAACCATCTATATCTCCTAGTCCAAGCATTAAAACATTATCACCACCATATAATGCTGTTCCAACACCATCAACTACTGAAAGGAATGTGCCACCATCCATACAACCAAGTCCACCTCAAAAGAAAGCACCTTCTGTTAGGCCTCCTGTACCCACCCCAACTGCTCCAGCTCCTGTTGCAGTACCTTCTGGCAATTTTCCAAGAATTTCCCCTGTCAGCCACCCAATTGAACATGGAAGTTTGCCTCCGATGATTGATAAGAGGAATGAAACTAAGAATCACAACCTACAGCCAGTTTCACCAGCCCCAATTGCAACACCTTCTACCAATTTCCCCAAGATATCACCTGTAAGCCATCCAACTGAAAATGGAAGTTTGCCTCCTAATGCTCATAGAGAGGGTACAAATAAAGGTCAAACCCCAGAGCCAATTTCACCAGCTCCTGTATTCAATTTGCCCAAACATTTTCCGGTGAGTCAGCCAACTGAACATGGAAGTTTGCCTCCAACTGTTCATAGAAGGAATTCCAGCACGGGTCACACATTGGATCCAGTTTCACAAGCCCCGGTTGCAATACCGCCTGCAATTTTGCCAAAAAGTTCACCAGTCAGCCAACCAATTCAAAATGCAAGTTTTTCACCTAATGTTCACAATGGAACAGCAAATAAACATCATACTCACACCCCAGAGCCAGATGCAGCACCGGTTACATCACCTACAAGTCCATTTCCAGTAGATCCTCCATTGGTCCATCCAGTCATACCAGCTGCATCTCCATCCAAGTCACCAGCTATCATTCTAGAGTGTTCAAGTGTTGTATCTGATTGCTATAATTTCTTTTATGTTGTTAATGCTATTGTGCAATCATTCTTCAAGACACTTAATCAGCATAAAACATTTGGTGCAGCACCTATTATCTCTCCTGCATTAACTCCTTCCAGAAGATTCAACTGGACAAAAGGTGGACAACCAGCTTCTGCTCCTTCGTACAGAACACCAAAGCCACAATCAAAGCCACTACCGGCTATAGTACATTCCCCTGCTCAAGTTCTACACACTCACACGGTTAATTTATTTATATTTTTTTCTCCTGTAGCTCCTGCTGTTCATAAAGAAAATCATCCTCCTGCATCTTCACCTTCAACCACAGTTTATAAGCATCACCATACAAGGAACACAATCACCAGTCCAGCTCCTGCATCATCATATTTAGTTTCTCCCCCCTCTTCAACACACCAAGATAAACCAATTCCTCCATCGTTACTGCCAACAAGTGGACGAAGACATCATGCACCACCACCAATAAACACAGGTTCTTCAGTTTCTCCATTCGCCTTCCCTATTCAATCACCAGTGAGCCAGGTTTCACCCGCTCCTTCTCCATCATTCAAAATATCCCCCCACCCAACCAAAATTCCATTTCATCCTCCTAAAGTATCTCCTTATCGGCCTACTTCCAAGAGCCCTAAGAAGCCAACCTTTCCAGAAGTTCAAGCATTGCCACCCCCACCTCCCAATGAAGATTGTTTATCAACTGTTTGCTCAGAGCCCTATACAAATTCTCCACCTGGATCACCTTGCAGATGTGTCTGGCCCATGAAAGTTGGCCTTCGCCTTAGTGTTTCTCTGTATACCTTCTTCCCTTTGGTTTCAGAGCTTGCTTCTGAAATTGCCACTGGGGTTTTCATGAGACAAAGTCAAGTTCGCATTATGGGAGCCAATGCAGCAAGCCAGCAACCAGATAAAACTATTGCCCTCATTGATTTGGTACCACTTGGGGAAGAATTTGACAAAACTACAGCCTTTTCAACTTCTGAGAGATTTTGGCACAAACAGGTTGTTATAAAAGCTTCTTACTTTGGTGATTATGACGTGTTATATGTGAACTATCCAGGTTTACCTCCATCTCCTCCTTTACCACCTTCAAGCATTAACATGGTAGATGGTGGCCCATATTCAGTTGGTGGCAATAATGGTAGGACAATAAAGCCCCTTGGGGTTGACATACAGAAGAGACAGCACAAGGGTGGACTTAGCAAGGGTGTAATAGCTATCATTGCTCTTTCAGTTTTTCTAGCAATTGTTTTATGCTCTGCTGCTGCTTTGACCGTGTTCAAGTGCAGAGATCATGTGAGTCAACAAACATCAACCCCACGGGTTTTGCCTTCTCTTTCCAAAGCACATGGTACTGCTGGGTCATTAGTTGGAGGTGTGCTTGCTTCAGCTTCATCATCATTTCGCTCTAGCATTGCTGCTTATACAGGATCTGCTAAGACTTTCAGTATGAATGAGATAGAGAAAGCCACTGATAATTTTCATCCTTCCAGAATACTTGGAGAAGGTGGTTTTGGGCTTGTTTATAGTGGTAGCCTTGAAGATGGGACAAAAGTAGCTGTGAAGGTTCTAAAAAGGGAGGATCATCATGGTGATCGTGAATTCCTATCTGAAGTTGAGATGCTTAGCCGCCTTCACCATAGAAATTTGGTAAAGTTGATTGGTATATGTCAAGAGGTCAGCTTCCGCTGCCTGGTTTATGAACTCATTCCAAATGGCAGCGTGGAATCTCATTTACATGGAGTTGACAGGGAAAATAGTCCACTAGATTGGAGTGCTCGGATAAAGATAGCACTTGGTGCTGCTCGTGGTCTGGCTTATCTGCATGAAGATTCAAGTCCACATGTCATACATAGGGACTTCAAGTCTAGCAATATCTTGCTGGAAGATGATTTTACACCAAAAGTATCTGATTTTGGATTGGCTCGAACAGCAACTGATGGGGATAATACACACATATCAACGCGTGTTATGGGGACTTTCGGTTATGTGGCTCCGGAGTACGCAATGACTGGGCATCTTCTTGTGAAGAGTGATGTTTACAGCTATGGTGTTGTTCTACTTGAGCTTTTGACAGGAAGAAAACCAGTAGACATGTCACAACCCCCTGGTCAAGAGAATCTTGTTGCGTGGGCACGTCCACTCCTCACAAGTAAAGAAGGATTGGAAATAATAATTGATCCATCTCTAGGAACCGATGTACCTTTTGATAGTGTGGCTAAAGTTGCAGCCATTGCTTCAATGTGTGTACAACCAGAGGTATCAGACCGTCCTTTCATGGGCGAGGTTGTTCAGGCTTTAAAACTTGTGTGTAATGAATGTGATGAAGCAAAAGAAGCAGGTTCAAGAAGTTCTAGCCAGGAGGATTTATCTGTTGATTTGAATAATGTTTCTGGACAACTAACAGATAATTTCCAAGGCCAATTCTCAGCCACACACTATGATTCTGGAGTTGATATTGAAAATGGTTTGTCAGCATCAGAGTTATTCAGCTCATCAGCAAGACTTGGAAGGCAAGTATCTGGATCATTTAGAATACATTCTTATTCAGGTCCTCTAAGAACTGGAAGAAGCAGGAGGTTGTGGCAGATAATTCGAAAGCTTTCCGGTGGCAGTGTCAGTGAACATGGAACTATGTTCAAGTTATGA 3849 0.4375 MKTGVVLALILQLVKFCIIGFAVEAQGPEGPSISPSPAFLLVVHPRGEAPGPIHHGQSWGSSASSPSEPNGFAISPSPATFPVDPSPSEAPGLLQPNGSFLHPPVTLPPPTSAPTPQKIKGIEPSISPSPSIKTLSPPYNAVPTPSTTERNVPPSIQPSPPQKKAPSVRPPVPTPTAPAPVAVPSGNFPRISPVSHPIEHGSLPPMIDKRNETKNHNLQPVSPAPIATPSTNFPKISPVSHPTENGSLPPNAHREGTNKGQTPEPISPAPVFNLPKHFPVSQPTEHGSLPPTVHRRNSSTGHTLDPVSQAPVAIPPAILPKSSPVSQPIQNASFSPNVHNGTANKHHTHTPEPDAAPVTSPTSPFPVDPPLVHPVIPAASPSKSPAIILECSSVVSDCYNFFYVVNAIVQSFFKTLNQHKTFGAAPIISPALTPSRRFNWTKGGQPASAPSYRTPKPQSKPLPAIVHSPAQVLHTHTVNLFIFFSPVAPAVHKENHPPASSPSTTVYKHHHTRNTITSPAPASSYLVSPPSSTHQDKPIPPSLLPTSGRRHHAPPPINTGSSVSPFAFPIQSPVSQVSPAPSPSFKISPHPTKIPFHPPKVSPYRPTSKSPKKPTFPEVQALPPPPPNEDCLSTVCSEPYTNSPPGSPCRCVWPMKVGLRLSVSLYTFFPLVSELASEIATGVFMRQSQVRIMGANAASQQPDKTIALIDLVPLGEEFDKTTAFSTSERFWHKQVVIKASYFGDYDVLYVNYPGLPPSPPLPPSSINMVDGGPYSVGGNNGRTIKPLGVDIQKRQHKGGLSKGVIAIIALSVFLAIVLCSAAALTVFKCRDHVSQQTSTPRVLPSLSKAHGTAGSLVGGVLASASSSFRSSIAAYTGSAKTFSMNEIEKATDNFHPSRILGEGGFGLVYSGSLEDGTKVAVKVLKREDHHGDREFLSEVEMLSRLHHRNLVKLIGICQEVSFRCLVYELIPNGSVESHLHGVDRENSPLDWSARIKIALGAARGLAYLHEDSSPHVIHRDFKSSNILLEDDFTPKVSDFGLARTATDGDNTHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDMSQPPGQENLVAWARPLLTSKEGLEIIIDPSLGTDVPFDSVAKVAAIASMCVQPEVSDRPFMGEVVQALKLVCNECDEAKEAGSRSSSQEDLSVDLNNVSGQLTDNFQGQFSATHYDSGVDIENGLSASELFSSSARLGRQVSGSFRIHSYSGPLRTGRSRRLWQIIRKLSGGSVSEHGTMFKL. 1283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03957 1282 SUPERFAMILY Protein kinase-like (PK-like) 874 1167 IPR011009 -
Seca5g03957 1282 PANTHER OS01G0750732 PROTEIN 623 1194 - -
Seca5g03957 1282 CDD STKc_IRAK 900 1168 - -
Seca5g03957 1282 Gene3D Phosphorylase Kinase; domain 1 866 969 - -
Seca5g03957 1282 FunFam Receptor-like serine/threonine-protein kinase ALE2 970 1188 - -
Seca5g03957 1282 MobiDBLite consensus disorder prediction 205 366 - -
Seca5g03957 1282 ProSiteProfiles Protein kinase domain profile. 894 1170 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g03957 1282 ProSitePatterns Protein kinases ATP-binding region signature. 900 922 IPR017441 GO:0005524
Seca5g03957 1282 MobiDBLite consensus disorder prediction 122 153 - -
Seca5g03957 1282 MobiDBLite consensus disorder prediction 497 540 - -
Seca5g03957 1282 MobiDBLite consensus disorder prediction 216 264 - -
Seca5g03957 1282 MobiDBLite consensus disorder prediction 557 583 - -
Seca5g03957 1282 MobiDBLite consensus disorder prediction 57 74 - -
Seca5g03957 1282 MobiDBLite consensus disorder prediction 584 605 - -
Seca5g03957 1282 MobiDBLite consensus disorder prediction 438 458 - -
Seca5g03957 1282 MobiDBLite consensus disorder prediction 493 625 - -
Seca5g03957 1282 Pfam Protein tyrosine and serine/threonine kinase 897 1167 IPR001245 GO:0004672|GO:0006468
Seca5g03957 1282 MobiDBLite consensus disorder prediction 51 184 - -
Seca5g03957 1282 MobiDBLite consensus disorder prediction 323 344 - -
Seca5g03957 1282 FunFam receptor-like serine/threonine-protein kinase ALE2 867 969 - -
Seca5g03957 1282 MobiDBLite consensus disorder prediction 154 182 - -
Seca5g03957 1282 MobiDBLite consensus disorder prediction 285 306 - -
Seca5g03957 1282 Gene3D Transferase(Phosphotransferase) domain 1 970 1193 - -
Seca5g03957 1282 MobiDBLite consensus disorder prediction 438 455 - -
Seca5g03957 1282 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1016 1028 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03957 Seca-Chr5 96684116 96693115 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03957 164 1278 Receptor kinase-like Gene Family AT5G56890 49.611 0.0 867
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Seca5g03957 PK_Tyr_Ser-Thr 1.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03957 - - gmx:100802309 1758.81