Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03951 ATGGGGTGCAACAAAGGGGAAATTGAGCTTGGTTTCTTAAACATGTCTCAAGCTGACATTCAAACAGCACTTAGAAGTTTGTTTCCTGAAGATTTTTCTAGACAATCCCAGCAAATTGATCAAAATCCACCTTCATCATCTTCATCTTCTTTGAGATCACTATCCACAGGTAGCCCTGAATATTCATCTCTGATATTTAATATTCCTGGCACTTCTCAATCCCACTTTCCTGAGACACTAGGAGTTGGAGGAGTGCCTCCAATGAGACCTGTGTCAAACACAGCCACAAGCCAAAACCAACAAGCCCTCCAACTCCAAGCATTGGCTCAAGTCACTCCAACTCCAAGTCAATTCCCTACACCAGAAACTGAACATGATGCAATAATGAGAGCAATCCTCAATGTTATTTCTTCACCTTCTCATCAACATCAAACCCAGCAAAACTGGCCTTATATGGTGCATCCAGAAGCTAGTGCTTTCATGAGGTATAGATCAGATAGAAGTTCCAATATGACACCCCAAATGGGGTCCAATTTCAGAAGGCAGAGCCTGATGAAGAGATCATTTGCATTCTTTAGAAACTTAAATTTTATGAGAATGAGAGAACGTATTCAAACAACACGTCCCTCTAGTACTCAGCTCCATCATATGATATCAGAAAGAAGAAGGCGTGAGAAACTAAATGAGAATTTCCAAGCACTCAGAGCATTACTTCCCCCAGGAACCAAGAAAGACAAAGCTTCCATACTGATAACTGCAAAGGAGACATTGAGCTCTTTGATGACTGAAATTGACAAGCTAAGCAAAAGAAATCAGGAATTGATGTCACTATTGCCAGCCAAAGAATCTACAACTGAAGAAAAAACCAAAGCTAGCAGCTTGTCATCAAATGAAAGATTAAATGTCCAAGTTTCACATGTACCAGAATCAAGTTCATCAGAAGAGCAAATGGTGGACTTGCAAGTGAATGTGAGAGGACAAATTTCTCAAGTTGATATATTGATCCGTTTATTGGAATTCTTAAAACAGGTTCACCATGTGAGCTTGGTTTCCATGGGGGCAAACACACATACAGAAGAAGGGAATGCCCTTCATCAACTAACTTTCAGGCTAAGAATTATTCAGGTATTAATAAAAATAGTTCATGAAATAGCATGGAATAACATGTTGTGA 1173 0.3956 MGCNKGEIELGFLNMSQADIQTALRSLFPEDFSRQSQQIDQNPPSSSSSSLRSLSTGSPEYSSLIFNIPGTSQSHFPETLGVGGVPPMRPVSNTATSQNQQALQLQALAQVTPTPSQFPTPETEHDAIMRAILNVISSPSHQHQTQQNWPYMVHPEASAFMRYRSDRSSNMTPQMGSNFRRQSLMKRSFAFFRNLNFMRMRERIQTTRPSSTQLHHMISERRRREKLNENFQALRALLPPGTKKDKASILITAKETLSSLMTEIDKLSKRNQELMSLLPAKESTTEEKTKASSLSSNERLNVQVSHVPESSSSEEQMVDLQVNVRGQISQVDILIRLLEFLKQVHHVSLVSMGANTHTEEGNALHQLTFRLRIIQVLIKIVHEIAWNNML. 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03951 390 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 24 374 IPR044658 -
Seca5g03951 390 SMART finulus 217 266 IPR011598 GO:0046983
Seca5g03951 390 CDD bHLH_AtbHLH_like 216 268 IPR045239 -
Seca5g03951 390 Pfam Helix-loop-helix DNA-binding domain 215 260 IPR011598 GO:0046983
Seca5g03951 390 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 211 276 IPR036638 GO:0046983
Seca5g03951 390 Coils Coil 250 277 - -
Seca5g03951 390 Gene3D - 210 287 IPR036638 GO:0046983
Seca5g03951 390 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 211 260 IPR011598 GO:0046983
Seca5g03951 390 MobiDBLite consensus disorder prediction 33 55 - -
Seca5g03951 390 Coils Coil 217 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03951 Seca-Chr5 96605087 96608979 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03951 1 373 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 41.337 1.30e-63 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca5g03951 HLH 3.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03951 - - gmx:100798452 479.174