Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03936 ATGAACGATTACATGGCCCAATTTCAAGCCCATTACGCCCAATTGGATGAGATGGATCATAACAGAACCAAGCGGGCTCGTCGCTCTGCTGTTTCTGTTGCCACTGCTGCTGCCGGTTCGGGTTCAGATGAACCCGGTTCGATTCAGTTAGAGGCCGGTTCATCGGTTCAAAATCAAAACACTCATAATCAGCAGCACCGGCGGTTATGGGTTAAGGACCGGTCCAAGGATTGGTGGGAGCGGTGCAGCCGGCAAGACTTCCCGGAGGAAGAGTTCCGGCGGTGGTTCCGGATGAGCAAGGCGACGTTCAACATGATCTGCGACGAGCTCGATTCGGTTGTGATGAAGAAAAACACGATGCTTCGCGACGCAATTCCGGTTCGGCAGCGTGTCGCGAAGTTTCTCCATTGGCCTAATGAAGAAAACATGAAGAGGATCAAGGAAGAGTTCGAGGGCATTTCGGGAATTCCAAATGTCGGTGGTTCAATGTACACAACCCATGTTCCTATAATTGCACCTAAGAAAGGGAGGTGGGCTTGTTTGCAGAAAAGAACAGAGGTAAAGCTTCAGGATTTGCCTGTTGTACTTGGTGCTTGTTGTGTTTTGCATAACATTTGTGAGATGAGGAATGAAGAGATGGATCCAGAATGGAAGTTTGAACTTTTTGATGATGAGATGGTGGCTGAGAATAGCATACGCTCTGCCAATTCAATGCAGGCTAGGGATCAAATAGCTCACTATTTGAACCAAAGAGAAAAGAGAGGAACCAGAGAGAGAGAGAGAGGGGTTTTGGGCATGGAGAATCACAAGGAGGAGGGTGAGGTGGTGATGGTAGGGGAGGAGAATGATGAGGTGGGACCCATGGCTGGTAAGGAGGAGGAAGATGAAGGAGCAGCTGGTTCGAGCTTAACCATGGAGAGGGTAGCTGTAGCCAAGAAATTCATTGAGAACCATTACAGGGCTCAGATGAAACACATCCAAGAACGCAAACAGAGGCGCTCAGTGCTACAAAAAGCATTAGAATCTTCCCATGTACCGAAAGAGGAACAGATCGATCTGCTGAAGGATTTAGAGCGCAAGGAGACTGAGTATATGCGGCTAAAAAGACATAAAATATGTGTTGATGATTTTGACCTTCTAACCATTATTGGCAGGGGAGCCTTTGGGGAGGTAAGGCTCTGTCAGGAGAAGAAATCAGGTAATATATATGCCATGAAAAAGTTGAAGAAAGCTGAAAGGAATGTGCTGGCTGAAGTTGCCAGTGACTGCATTGTGAAACTGTATTACTCTTTTCAGGATGCTGAACACTTGTATCTTATAATGGAATATTTACCTGGTGGTGATATAATGACTTTGTTGATGAGGGAAGAAACGTTGACTGAAACTGTGTCTAGATTTTACATTGCCCAAAGCGTTTTGGCCATAGAGTCAATTCATAAACATAACTACATTCATCGGGATATAAAACCTGATAACCTTCTATTGGACAAAAATGGTCATATGAAGCTGTCTGATTTTGGTCTTTGCAAGCCACTTGACTGCTCAAATCTATCATCTATAAATGAAAATGAAGTATTGGATGATGAGAACTTGAATGATACCGTGGATGGTGATGGAGCCTTCCCAAATAACAGGAATGGTAGGCGTTGGAAAAGTCCCCTTGAACAACTTCAACATTGGCAAATGAATAGGAGGAAGCTGGCATTTTCCACTGTTGGAACTCCAGACTATATTGCTCCGGAAGTGTTACTGAAAAAGGGTTATGGCGTGGAGTGCGACTGGTGGTCTCTTGGTGCTATAATGTATGAGATGCTTGTTGGTTACCCCCCATTTTACTCTGATGATCCTGTAACAACATGCAGAAAGATTGTGCACTGGAAAAATCACTTAAAATTTCCAGAGGAAGCAAGATTGACTCCTGAAGCAAAGGATCTGATATGTAGGTTGCTTTGTAGTGTTCCACATAGGCTTGGTACCAGAGGAGCAGATGAAATTAAAGCTCATCCTTGGTTCAGAGATGTCATATGGGACAGGCTCTATGAAATGGACGCAGCATTTAAACCACAAGTCAATGGGGAGCTTGACACACAGAATTTTATGAAATTTGATGAGGTTGAACAACCAAAACCAACTAGATCTGGTTCCGGACCCATGAGAAAGATGCTCTTAACTCCTCAAGATCTTAGTTTTGTTGGCTATACATATAAGAATTTTGCTGCTGTCAAGGGGAATCGTCATTCTACTGATAAGGGGAAGAGCTTGTCACCACAGCGGCAATCAGTTGATTCCTCACACAGTAATGGAACCTAA 2310 0.4437 MNDYMAQFQAHYAQLDEMDHNRTKRARRSAVSVATAAAGSGSDEPGSIQLEAGSSVQNQNTHNQQHRRLWVKDRSKDWWERCSRQDFPEEEFRRWFRMSKATFNMICDELDSVVMKKNTMLRDAIPVRQRVAKFLHWPNEENMKRIKEEFEGISGIPNVGGSMYTTHVPIIAPKKGRWACLQKRTEVKLQDLPVVLGACCVLHNICEMRNEEMDPEWKFELFDDEMVAENSIRSANSMQARDQIAHYLNQREKRGTRERERGVLGMENHKEEGEVVMVGEENDEVGPMAGKEEEDEGAAGSSLTMERVAVAKKFIENHYRAQMKHIQERKQRRSVLQKALESSHVPKEEQIDLLKDLERKETEYMRLKRHKICVDDFDLLTIIGRGAFGEVRLCQEKKSGNIYAMKKLKKAERNVLAEVASDCIVKLYYSFQDAEHLYLIMEYLPGGDIMTLLMREETLTETVSRFYIAQSVLAIESIHKHNYIHRDIKPDNLLLDKNGHMKLSDFGLCKPLDCSNLSSINENEVLDDENLNDTVDGDGAFPNNRNGRRWKSPLEQLQHWQMNRRKLAFSTVGTPDYIAPEVLLKKGYGVECDWWSLGAIMYEMLVGYPPFYSDDPVTTCRKIVHWKNHLKFPEEARLTPEAKDLICRLLCSVPHRLGTRGADEIKAHPWFRDVIWDRLYEMDAAFKPQVNGELDTQNFMKFDEVEQPKPTRSGSGPMRKMLLTPQDLSFVGYTYKNFAAVKGNRHSTDKGKSLSPQRQSVDSSHSNGT. 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03936 769 SUPERFAMILY Protein kinase-like (PK-like) 360 721 IPR011009 -
Seca5g03936 769 PANTHER SERINE/THREONINE-PROTEIN KINASE 224 717 - -
Seca5g03936 769 SMART serkin_6 377 671 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g03936 769 ProSiteProfiles Protein kinase domain profile. 377 671 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g03936 769 FunFam Non-specific serine/threonine protein kinase 570 689 - -
Seca5g03936 769 FunFam Non-specific serine/threonine protein kinase 448 515 - -
Seca5g03936 769 SMART pkinase_C_6 672 737 IPR000961 GO:0004674|GO:0005524|GO:0006468
Seca5g03936 769 Gene3D Transferase(Phosphotransferase) domain 1 570 689 - -
Seca5g03936 769 Pfam Protein kinase domain 563 671 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g03936 769 Pfam Protein kinase domain 379 515 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g03936 769 ProSitePatterns Protein kinases ATP-binding region signature. 383 406 IPR017441 GO:0005524
Seca5g03936 769 MobiDBLite consensus disorder prediction 753 769 - -
Seca5g03936 769 Gene3D Phosphorylase Kinase; domain 1 690 700 - -
Seca5g03936 769 ProSitePatterns Serine/Threonine protein kinases active-site signature. 483 495 IPR008271 GO:0004672|GO:0006468
Seca5g03936 769 Gene3D Phosphorylase Kinase; domain 1 375 443 - -
Seca5g03936 769 MobiDBLite consensus disorder prediction 744 769 - -
Seca5g03936 769 ProSiteProfiles AGC-kinase C-terminal domain profile. 672 745 IPR000961 GO:0004674|GO:0005524|GO:0006468
Seca5g03936 769 Gene3D Transferase(Phosphotransferase) domain 1 444 511 - -
Seca5g03936 769 CDD MobB_NDR_LATS-like 311 372 - -
Seca5g03936 769 MobiDBLite consensus disorder prediction 20 49 - -
Seca5g03936 769 CDD STKc_NDR_like 375 736 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03936 Seca-Chr5 96433327 96444685 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03936 266 756 AGC Kinase Gene Family AT2G19400 72.530 0.0 758
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Seca5g03936 Pkinase 3.9e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03936 K08790 - gmx:100811359 843.573