Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03931 ATGGAGGAAATAACTTCGACGGTTGCAGTGCCATTTACACTTGGGAATTTAATCCAAAAGGAGTCAGCAGTTACCACCCACATGGAGATAACTGGTTTAAAGCTTATGGCAAATACAGCAGCAGCTTTAATAATAAATCCTGCAATTGAGGGTTGTCAATCCTTCTCTGTTAGAAGTGAAAACCACACAGATATTAGTCCACAGCACCAAATTGCAGTGTCTGAAGAGGTAAAGGAGAATCAGGTTGGAGCTGACCTTGTTTCAGAAATGGTTATTGGAGGTGACAATAATGGGTTCCATCACCAGGCAAGAAATGAAGATGAATTCATGTTAGCTAAGGATTTTCAGTCTACACATAATCCAATCTCTCAATCTGCTGCTAGTGAAAAAAACAGTCCTTGTAGGGAGGAATCTGCTATTTTGAGGACTAATTGTTATGAAATAAATTCACCAAATACCATCAAGGTTGATGATAATATCCATGGTGGGTCCAATTTGACTGAGCTACATGCAGAACTAGAGCCAGTGCAGAAGAACATGGCTTCTGTTGTGATGCAATATGAGGGTGAAGATGGGAGTGGATCTGATAGGTCTGATCCAAAACCATTTGCTGTGTTTTATGAGATGCCAGAGAAGCAAGCATGTGGAACAAGCTGCCAGAATTCCTTGGAATTGAGTGGCACCCCTCTTTGGGGTTTTTCATCAGTTTGTGGAAGAAGACAGGAGATGGAAGATGCTATTGCTGTCAAGCCTCAACTTTTTCAAGTCCCTTCATGGATGCTGATGGAGGACCAAGTGAATGAAAACACAAAATACTCACCAGCCCATTTTTTTGGCGTCTATGATGGGCATGGGGGATGTCAGGTTGCCAACTACTGCCAGGAACATCTCCATTCAGTGTTGATTGAGGAGATAAAAGCTGCAGAATTTGAAAAGAATGGGAGAGACAACTGGCAGGACCAATGGAAGAGAGCATTCTCCAATTGTTTTCATAAAGTAGATGATGAGGTTGGAGGAGTTCATCCAAATAATGGTGGGTCTGAGTCAAGTACTGAAGAACCTCTTACTCCTGAGACTGTTGGCTCCACTGCGCTGGTTGCCATTTTGACTCAAACCCACATAATAGTTGCAAATTGTGGCGACTCAAGAGCAGTCTTGTATCGCGGAAAAGAAGCACTGCCATTGTCTGATGACCACAAACCAAATAGAGAGGATGAGTGGGAAAGGATAGAAGCTTCAGGAGGAAGGATCATACAATGGAATGGGTACCGAGTTCTGGGTGTTTTGGCAGTGTCAAGGTCCATAGGTGATAGATACTTGAAACCATGGATAATTCCAGACCCAGAAGTCAAGTGTGTCCTTCGAGAGAAAAATGATGAGTGCCTTATCCTAGCCAGTGATGGTTTATGGGATGTCATGACAAATGAAGAAGCATGTGAAATTGCACGAAAGCGAATCCTTCTTTGGCATAAGAAGAATGGCAACAGCGTATCAACAAGACAAGGCCACGGAGTTGATCCTGCGGCTCAGTCTGCTGCAGAGTATCTATCTAAACTTGCCCTTCAAAGGGGAAGCAAAGATAACATCTCTGTTATTGTTATAGACTTGAAGGCTCAAAGACAATTTAAGAGAAAAGCATAA 1641 0.4266 MEEITSTVAVPFTLGNLIQKESAVTTHMEITGLKLMANTAAALIINPAIEGCQSFSVRSENHTDISPQHQIAVSEEVKENQVGADLVSEMVIGGDNNGFHHQARNEDEFMLAKDFQSTHNPISQSAASEKNSPCREESAILRTNCYEINSPNTIKVDDNIHGGSNLTELHAELEPVQKNMASVVMQYEGEDGSGSDRSDPKPFAVFYEMPEKQACGTSCQNSLELSGTPLWGFSSVCGRRQEMEDAIAVKPQLFQVPSWMLMEDQVNENTKYSPAHFFGVYDGHGGCQVANYCQEHLHSVLIEEIKAAEFEKNGRDNWQDQWKRAFSNCFHKVDDEVGGVHPNNGGSESSTEEPLTPETVGSTALVAILTQTHIIVANCGDSRAVLYRGKEALPLSDDHKPNREDEWERIEASGGRIIQWNGYRVLGVLAVSRSIGDRYLKPWIIPDPEVKCVLREKNDECLILASDGLWDVMTNEEACEIARKRILLWHKKNGNSVSTRQGHGVDPAAQSAAEYLSKLALQRGSKDNISVIVIDLKAQRQFKRKA. 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03931 546 CDD PP2Cc 232 536 IPR001932 -
Seca5g03931 546 ProSiteProfiles PPM-type phosphatase domain profile. 230 536 IPR001932 -
Seca5g03931 546 MobiDBLite consensus disorder prediction 337 357 - -
Seca5g03931 546 Pfam Protein phosphatase 2C 233 529 IPR001932 -
Seca5g03931 546 MobiDBLite consensus disorder prediction 343 357 - -
Seca5g03931 546 ProSitePatterns PPM-type phosphatase domain signature. 277 285 IPR000222 GO:0043169
Seca5g03931 546 SMART PP2C_SIG_2 261 536 IPR001932 -
Seca5g03931 546 SMART PP2C_4 220 534 IPR001932 -
Seca5g03931 546 PANTHER PROTEIN PHOSPHATASE 182 536 IPR015655 GO:0004722|GO:0006470
Seca5g03931 546 SUPERFAMILY PP2C-like 229 537 IPR036457 -
Seca5g03931 546 Gene3D - 219 546 IPR036457 -
Seca5g03931 546 FunFam Protein phosphatase 2C 16 218 546 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03931 Seca-Chr5 96380132 96383623 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03931 205 546 PP2C-type Phosphatase Gene Family AT1G17550 56.000 4.04e-136 403
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03931 K14497 - gmx:100812974 742.265