Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03930 ATGAAGAAAGGAAGCTTAGGCCCCAGTCTCAAACTCACTGTTCCTGCATCTGATCAGGATTCTTTTGCCAAGTTCCTGACTGAAAGCGGGACGTTCAGTGATGGGAACCTACTTGTCAATAGGGATGGACTTCAAATTGTCTCTCAGAGTAAAGTGGAAACTGAAGGGATTCCTGAATTCTCTGTGGTTTCCTATGCATACTTTTATGGTGGTCTAAATATTTTCAAGACCCAACTATTAATGTGCTTTTTGGACAATGATGGAGTGGAGCTGAATTCTGATAATTTGTTATTTGAGTTTAATATTTGTGCTATTTTTCAGCAACCCCCGATCAGGCCAGTAGACAACCAGTTAAATTTGGCAGACATTGATACAATCAAAGTGATTGGAAAGGGTAATGGGGGGATAGTGCAATTGGTGCAACACAAATGGACTAATCAGTTTTTTGCATTAAAGAGAATTCAAATGAATATTGAGGAGTCTGAGTGCAGGCAAATAGCAAAAGAGCTAAAAATCAATCAATCAACACAATGTCCTTATGTTGTTGTCTGGTACCAATCATTCTATGAAAATGGTGCCATATCAATCATCTTAGAGTACATGGATGGAGGGTCCTTAGAGGATCTTCTGAAAAAAGTTAAAACAATTCCAGAGCCATATCTCGCTGCCATCTGTAAGCAGGTGCTGAAGGGTTTAATGTATCTTCATCATGAGAAACATATTATCCACAGGGACATGAAAACTTCTAATCTGCTGATAAATCATAGAGGGGAGGTAAAGATTACTGACTTTGGTGTGAGTGCAATCATGGAAAATACATCTGGTCAAGCAAATACTTTCATTGGCACACGCGCCTATATGTCTCCAGAGAGAATCAAAGGAAGCCAGAATGGGCACATGTACAACTACAAAAGTGATATATGGAGCTTTGGATTGATGTTGCTCGAGTGTGCTACAGGGAGGTTTCCATATACACCACCAGATCAAAGTGAAGGGTGGGAAAATATGTTCCAGCTCATTGAAGCCATTGTTGAAAAACCTTCACCTAGTGCCCCAGCTGATGAATTTTCTCCAGAATTTTGCTCATTTATCTCAGCATGTTTACAGAAAAATCCAAGGGATAGACCATCAGCTCTGGACCTTATGAGGCATCCTTTTATCACCATGTATGACGACTTGGATGTGGATCTTTCAGCTTATTTCTCCAATGCGGGATCTACACCTGCAACCATATAA 1236 0.4013 MKKGSLGPSLKLTVPASDQDSFAKFLTESGTFSDGNLLVNRDGLQIVSQSKVETEGIPEFSVVSYAYFYGGLNIFKTQLLMCFLDNDGVELNSDNLLFEFNICAIFQQPPIRPVDNQLNLADIDTIKVIGKGNGGIVQLVQHKWTNQFFALKRIQMNIEESECRQIAKELKINQSTQCPYVVVWYQSFYENGAISIILEYMDGGSLEDLLKKVKTIPEPYLAAICKQVLKGLMYLHHEKHIIHRDMKTSNLLINHRGEVKITDFGVSAIMENTSGQANTFIGTRAYMSPERIKGSQNGHMYNYKSDIWSFGLMLLECATGRFPYTPPDQSEGWENMFQLIEAIVEKPSPSAPADEFSPEFCSFISACLQKNPRDRPSALDLMRHPFITMYDDLDVDLSAYFSNAGSTPATI. 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03930 411 ProSiteProfiles Protein kinase domain profile. 123 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g03930 411 FunFam Mitogen-activated protein kinase kinase 6 204 406 - -
Seca5g03930 411 ProSitePatterns Protein kinases ATP-binding region signature. 129 152 IPR017441 GO:0005524
Seca5g03930 411 SUPERFAMILY Protein kinase-like (PK-like) 124 395 IPR011009 -
Seca5g03930 411 FunFam Mitogen-activated protein kinase kinase 1 106 202 - -
Seca5g03930 411 CDD PKc_MAPKK_plant_like 121 391 - -
Seca5g03930 411 SMART serkin_6 123 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g03930 411 ProSitePatterns Serine/Threonine protein kinases active-site signature. 241 253 IPR008271 GO:0004672|GO:0006468
Seca5g03930 411 Gene3D Transferase(Phosphotransferase) domain 1 203 409 - -
Seca5g03930 411 Gene3D Phosphorylase Kinase; domain 1 106 202 - -
Seca5g03930 411 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 18 401 - -
Seca5g03930 411 Pfam Protein kinase domain 125 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03930 Seca-Chr5 96375503 96379392 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03930 27 406 MAP Kinase Kinase Gene Family AT4G26070 56.842 8.87e-155 439
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Seca5g03930 Pkinase 2.1e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03930 K20603 - gmx:100789734 536.184