Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03923 ATGTCTGCACCAGTGAACATCAATGTAGGTTCTCATGTTTGGGTTGAAGATAAAGTGCAAGCATGGATTGGTGGCGAAGTTTCTAAAATCAATAGTGAAGAAGTCCATGTTTGCACCACAAATGGGAAAACAGTTGTCATAAATATCTCAAAAGTTTTTCCCAAGGACGATGAAGCTCCCCCTGGAGGTGTAGATGACATGACAAAACTGTCATACTTGCATGAACCTGGAGTTCTGCACAACTTGGCAGCTAGATATGAACTCAATGAAATCTATACCTATACTGGCAATATCCTGATTGCGATAAACCCATTTCAAAGGTTACCACATCTATATGATACTCACATGATGGAACAATATAAAGGGGCTGCATTTGGAGAGTTGAGTCCCCATGTTTTTGCGGTTGCAGATGTTGCATACAGGGCAATGATCAATGAGGGGAAAAGCAACTCAATCCTGGTTAGTGGTGAGAGTGGGGCCGGTAAGACAGAGACAACAAAAATGCTTATGCGTTATCTTGCTTACCTTGGGGGCCGATCTGGAGTAGAAGGGCGAACTGTCGAACAACAAGTGCTAGAATCTAATCCAGTTCTTGAAGCATTTGGCAATGCAAAAACAGTTAGAAACAATAACTCAAGTCGTTTTGGTAAATTTGTTGAGATCCAATTTGACAACAAGGGGAGGATCTCTGGGGCAGCTATACGAACTTACTTGCTTGAAAGGTCCCGTGTTTGTCAAATTTCTGATCCTGAAAGAAATTACCATTGTTTTTATCTTCTTTGTGCAGCACCAGCTGAGGAAAAAAATAAGTATAAGCTGGGAGGTCCCAGTTCCTTCCATTACTTAAATCAATCCAACTGCTATGAACTGGATGGAGTTGATGATGCAAATGAATATATTGCAACCCGAAGGGCAATGGATGTTGTTGGAATCAATGAGGAAGAGCAGGAGGCAATTTTTAGGGTTGTTGCAGCAATTCTGCACCTTGGAAATATTGAATTTTCAAAAGGAGAGGAGATTGATTCTTCTGTCATCAAGGATGAGAAGTCTAGGTTCCATCTTAATATGACTGCTGAACTTCTTAAGTGTGATGCTAAGAGCTTGGAAGATGCACTGATCAAGCGTGTGATGGTAACACCTGAGGAGATTATTACAAGAACCCTTGATCCTGTTGCAGCTGTTGGTAGCAGGGATGCATTAGCTAAAACCATTTATTCACGTTTGTTTGATTGGCTTGTGGAGAAGATTAACATTTCAATTGGGCAAGATCCAAATTCAAAATTTATTATTGGAGTTCTTGATATCTATGGGTTTGAAAGTTTTAAATTGAACAGTTTTGAGCAGTTCTGTATTAATTTTACAAATGAGAAGTTGCAGCAACATTTTAATCAGCATGTCTTTAAAATGGAACAAGAAGAATACACCAAAGAAGAGATCAATTGGAGTTACATAGAGTTTGTTGACAACCAAGATGTTTTGGATCTAATTGAGAAGGTATTCACTGTTGCTTTCTGTATTGTTAATTTCAAACCTGGAGGAATAATTGCACTCCTCGATGAAGCCTGTATGTTTCCTAAGTCCACACACGAAACATTTGCTCAGAAGTTGTACCAGACATTCAAAAATAACAAGCGCTTTATCAAGCCTAAACTTTCTCGTACTAGTTTTACCATATCCCATTATGCAGGGGAGGTGACATATCAGGCTGATATGTTTCTTGACAAAAACAAGGATTATGTGGTCGCAGAACATCAGCATCTGCTGATAGCCTCAAAATGCTCATTTGTGGCAGGTCTATTCCCCCCTTCTCCGGAGGAGTCTTCAAAATCATCCAAGTTCTCTTCGATTGGATCTCGTTTTAAGTTGCAACTTCAATCTTTGATGGAAACCTTAAATTCAACAGAACCTCACTATATCAGATGCGTGAAGCCGAACAATGTCCTCAAGCCCGCTATTTTTGAAAATCTCAATATCATCCAACAATTACGCTGTGGTGGTGTTCTTGAGGCAATAAGAATCAGCTGTGCTGGATATCCTACCAGACGGACCTTTTATGAGTTCCTTAACCGATTTGGTGTTCTGGCCCCCGAAGTTTTAGATGGAAACTATGATGACAAGGTTGCATGCCAAAATATCCTGGATAAAATGGGTATGAAGGGCTATCAGATAGGCAAGACAAAGACTTTCCTGAGGGCTGGTCAGATGGCTGAGTTGGATGCAAGAAGAGCAGAGGTTCTTGGAAAGGCAGCCAGAGTCATCCAGAGACAAATACGCACTCATATTGCACGCAAGGAATTCGTTGAATTGCGTCAAGCTGCAATTGTTTTGCAATCTGATTTACGAGGCATATTGGCTCGAAAGCTCTATGAGCAGTTGCAACGTGAAGCAGCAGCTGTGAAAATAGAAAAGAACTTCAAAGGATACATTGCCAGGAAATCTTACTTAACAGTGCGATTATCATCCATCACATTACAGACAGGTTTAAGGGCTATGAAGGCCCGCGATGAATTTAGATTTAGAAAGCAAACAAAGGCTGCAATTTTTATCCAGGCTCATTTACGGAGACACTTTGCATATTCTTATTATAAGCGATTGCAGAAGGCAGCAATTGTTTCTCAGTGTGGTTGGAGGAGAAGGGTTGCTAGGAGGGAACTTAGAATGCTCAAAATGGCTGCCAGAGAAACAGGGGCCCTTAAAGAAGCAAAAGACAAGCTAGAAAAGCGTGTTGAAGAACTTACATGGCGTTTGCAAATAGAAAAGCGTTTGAGAACTGATTTGGAAGAGGAAAAAGCACAAGAAATTGGTAAATTAAAGGATGCTTTGCATGCAATGCAAATAAAAGTAGAGGAAGCAAATGCCAAGGTCATCAAAGAGCGAGAGGCAGCTCAGAAAGCCATTGAAGAAACACCTCCAATCATTAAGGAGACTCCTGTTATAATTCAAGACACTGAAAAGATTAATTCCTTGATGGATGAAGTCAATAGTTTAAAGGAATCACTGCTATTGGAAAGAAAGAATAAAGAAGAGGCCAGAAAAGCTCAGACTGAGGCCGAGGCTAAAAATGAGGAGCTGGTTAAGAAAGTTGACGATTATGAGCATAAAGTGGATCAACTCCAAGAATTGGTTCAGAGGTTGGAGGACAAAATTTCCAATGCAGAATCAGAAAATCAAGTTCTTCGTCAGCAAGCCCTGGCTGTATCTCCAACTGGAAAAGCTCTATCTGCAAGACCTAAGACAGTGATTATTCAAAGGACACCAGAAAGTGGGAATGCTCTAAATGGTGGAGCAAAAACTGCATCAGATATGAGTCTTGCTGTATCAAATGTGCGTGAGCCTGAATCAGAGGGAAAACCACAAAAATCTCTCAATGAGAAGCAGCAAGGGAACCAGGACTTGCTTATCAAATGCATATCACAAGATTTGGGATATTCTGGGGGCAAACCTGTTGCTGCATGTGTTATATATAAATGCCTTCTTCACTGGAGATCATTTGAAGTCGAAAGAACAAGTGTTTTTGACAGTATCATTCAAACAATTACTTCAATCGTTGAGGCTCAGGATAATACTGATGTATTAGCCTATTGGTTGTCTAATACATCTACTTTGTTGTTGCTACTCCAACGCACTCTTAAAGCAAGTGGAGCAGCTAGTTTAACACCCCAACGGCGGAGAACAGCATCATCTTCTCTGTTTGGAAGAATGTCTCAAGGTCTAAGGCAATCTCCCCAAAGTGCTGCATCATTTGTAAATGGTCGAGGGCTTGGAAGATTGGATGATTTACGGCAAGTGGAAGCAAAATATCCGGCACTTCTGTTTAAGCAACAGCTCACTGCCTTCCTTGAAAAAATATATGGAATAATAAGAGACAATCTAAAAAAGGAGATATCTCCATTACTTGGATTGTGTATCCAGGCTCCAAGGACCTCACGGCAAAGTTTAGTAAAAGGACGTGCACGTGCTAATGCAGTTGCTCAGCAAGCTTTAATTGCTCACTGGAGAAGTATTGTGAACAGCTTAAACAATTATCTAAAGATATTGAAAGAAAATTATGTGCCCCCCTTCTTGGTCCGTAAAGTGTTCACTCAAATATTCTCTTTCATTAATGTTCAATTATTCAACAGTCTTCTGTTGCGACGCGAGTGTTGCTCCTTCAGTAATGGGGAGTATGTAAAGACAGGTTTGGGTGAGTTAGAACAGTGGTGCACTGAGGCAACAGAGGAGTATGCTGGCTCAGCTTGGGAGGAACTGAAACATATCAGGCAGGCTATCGGATTCCTAGTGATACATCAAAAACCCAAAAAGACCTTGAATGAAATAACAAAGGAGCTTTGCCCTGTTCTTAGTATACAACAGTTATACAGAATCAGTACAATGTACTGGGATGACAAATATGGTACACACACTGTATCTACAGATGTTATAACAAACATGAGAAAGTTGATGTCTGAGGACTCAAACAACGCTGTCAGCAGTTCCTTCCTATTAGATGATGACTCTAGCATTCCATTTTCAGTGGATGACATTTCCAAATCAATGCCACAAGTAGACATAGCAGACGTGGATCCACCTCCATTGGTTCGTGATAATTCAGGATTTGGGTTCTTACTAGCACGCACAGAGTGA 4623 0.4062 MSAPVNINVGSHVWVEDKVQAWIGGEVSKINSEEVHVCTTNGKTVVINISKVFPKDDEAPPGGVDDMTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAAFGELSPHVFAVADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDNKGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCAAPAEEKNKYKLGGPSSFHYLNQSNCYELDGVDDANEYIATRRAMDVVGINEEEQEAIFRVVAAILHLGNIEFSKGEEIDSSVIKDEKSRFHLNMTAELLKCDAKSLEDALIKRVMVTPEEIITRTLDPVAAVGSRDALAKTIYSRLFDWLVEKINISIGQDPNSKFIIGVLDIYGFESFKLNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKVFTVAFCIVNFKPGGIIALLDEACMFPKSTHETFAQKLYQTFKNNKRFIKPKLSRTSFTISHYAGEVTYQADMFLDKNKDYVVAEHQHLLIASKCSFVAGLFPPSPEESSKSSKFSSIGSRFKLQLQSLMETLNSTEPHYIRCVKPNNVLKPAIFENLNIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLNRFGVLAPEVLDGNYDDKVACQNILDKMGMKGYQIGKTKTFLRAGQMAELDARRAEVLGKAARVIQRQIRTHIARKEFVELRQAAIVLQSDLRGILARKLYEQLQREAAAVKIEKNFKGYIARKSYLTVRLSSITLQTGLRAMKARDEFRFRKQTKAAIFIQAHLRRHFAYSYYKRLQKAAIVSQCGWRRRVARRELRMLKMAARETGALKEAKDKLEKRVEELTWRLQIEKRLRTDLEEEKAQEIGKLKDALHAMQIKVEEANAKVIKEREAAQKAIEETPPIIKETPVIIQDTEKINSLMDEVNSLKESLLLERKNKEEARKAQTEAEAKNEELVKKVDDYEHKVDQLQELVQRLEDKISNAESENQVLRQQALAVSPTGKALSARPKTVIIQRTPESGNALNGGAKTASDMSLAVSNVREPESEGKPQKSLNEKQQGNQDLLIKCISQDLGYSGGKPVAACVIYKCLLHWRSFEVERTSVFDSIIQTITSIVEAQDNTDVLAYWLSNTSTLLLLLQRTLKASGAASLTPQRRRTASSSLFGRMSQGLRQSPQSAASFVNGRGLGRLDDLRQVEAKYPALLFKQQLTAFLEKIYGIIRDNLKKEISPLLGLCIQAPRTSRQSLVKGRARANAVAQQALIAHWRSIVNSLNNYLKILKENYVPPFLVRKVFTQIFSFINVQLFNSLLLRRECCSFSNGEYVKTGLGELEQWCTEATEEYAGSAWEELKHIRQAIGFLVIHQKPKKTLNEITKELCPVLSIQQLYRISTMYWDDKYGTHTVSTDVITNMRKLMSEDSNNAVSSSFLLDDDSSIPFSVDDISKSMPQVDIADVDPPPLVRDNSGFGFLLARTE. 1541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03923 1540 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 8 57 IPR004009 GO:0003774|GO:0005524|GO:0016459
Seca5g03923 1540 FunFam Myosin 2 312 427 - -
Seca5g03923 1540 CDD MyosinXI_CBD 1124 1506 IPR037975 GO:0007015
Seca5g03923 1540 SMART DIL_2 1358 1465 IPR002710 -
Seca5g03923 1540 PANTHER MYOSIN 58 1471 - -
Seca5g03923 1540 Pfam Myosin head (motor domain) 64 731 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca5g03923 1540 Gene3D - 439 634 - -
Seca5g03923 1540 SMART MYSc_2a 56 744 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca5g03923 1540 Coils Coil 934 968 - -
Seca5g03923 1540 Gene3D - 678 744 - -
Seca5g03923 1540 ProSiteProfiles Myosin motor domain profile. 62 743 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca5g03923 1540 Gene3D - 252 310 - -
Seca5g03923 1540 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 796 894 IPR027417 -
Seca5g03923 1540 Pfam DIL domain 1359 1462 IPR002710 -
Seca5g03923 1540 CDD MYSc_Myo11 76 731 IPR036018 -
Seca5g03923 1540 Coils Coil 1536 1540 - -
Seca5g03923 1540 FunFam Myosin heavy chain 252 307 - -
Seca5g03923 1540 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 35 796 IPR027417 -
Seca5g03923 1540 ProSiteProfiles IQ motif profile. 769 798 IPR000048 GO:0005515
Seca5g03923 1540 Coils Coil 888 929 - -
Seca5g03923 1540 ProSiteProfiles IQ motif profile. 842 868 IPR000048 GO:0005515
Seca5g03923 1540 ProSiteProfiles IQ motif profile. 818 846 IPR000048 GO:0005515
Seca5g03923 1540 ProSiteProfiles IQ motif profile. 794 823 IPR000048 GO:0005515
Seca5g03923 1540 MobiDBLite consensus disorder prediction 1107 1126 - -
Seca5g03923 1540 Coils Coil 990 1062 - -
Seca5g03923 1540 Pfam IQ calmodulin-binding motif 748 766 IPR000048 GO:0005515
Seca5g03923 1540 Pfam IQ calmodulin-binding motif 843 863 IPR000048 GO:0005515
Seca5g03923 1540 Pfam IQ calmodulin-binding motif 770 789 IPR000048 GO:0005515
Seca5g03923 1540 FunFam unconventional myosin-Va 844 892 - -
Seca5g03923 1540 Gene3D Kinesin motor domain 65 673 IPR036961 -
Seca5g03923 1540 Gene3D - 796 843 - -
Seca5g03923 1540 Gene3D - 844 893 - -
Seca5g03923 1540 Gene3D - 745 795 - -
Seca5g03923 1540 ProSiteProfiles Dilute domain profile. 1173 1483 IPR002710 -
Seca5g03923 1540 FunFam Myosin XI D 678 741 - -
Seca5g03923 1540 FunFam unconventional myosin-Va 748 796 - -
Seca5g03923 1540 SMART iq_5 768 790 IPR000048 GO:0005515
Seca5g03923 1540 SMART iq_5 864 886 IPR000048 GO:0005515
Seca5g03923 1540 SMART iq_5 841 863 IPR000048 GO:0005515
Seca5g03923 1540 SMART iq_5 745 767 IPR000048 GO:0005515
Seca5g03923 1540 SMART iq_5 793 815 IPR000048 GO:0005515
Seca5g03923 1540 SMART iq_5 816 838 IPR000048 GO:0005515
Seca5g03923 1540 PRINTS Myosin heavy chain signature 92 111 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca5g03923 1540 PRINTS Myosin heavy chain signature 149 174 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca5g03923 1540 PRINTS Myosin heavy chain signature 196 223 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca5g03923 1540 PRINTS Myosin heavy chain signature 429 457 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca5g03923 1540 PRINTS Myosin heavy chain signature 482 510 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca5g03923 1540 Gene3D Myosin VI head, motor domain, U50 subdomain 312 612 - -
Seca5g03923 1540 Pfam Myosin N-terminal SH3-like domain 10 51 IPR004009 GO:0003774|GO:0005524|GO:0016459
Seca5g03923 1540 ProSiteProfiles IQ motif profile. 865 894 IPR000048 GO:0005515
Seca5g03923 1540 ProSiteProfiles IQ motif profile. 748 772 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03923 Seca-Chr5 96313759 96331407 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03923 67 1540 Myosins gene family AT5G20490 80.949 0.0 2477
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03923 K10357 - gmx:100777802 2737.98