Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03920 ATGCAAAAATCCAAGATAGGTTGTCATAATCCCATAAGAAACTTGAAAATTCAGCAAAATGATACCAAACTTAAGGCACTCCAAAGGGTGTTAGAACCAACAAACAGAGAAAAAAGGGTGAGACGTGAGGTTATGGACGGTGAAGAGCAGTACAACCCTCGCTCCATCGAGGCGGTTTTCCGGGACTTCAAGGGCCGCAGGACTGGCCTGATCAAGGCCCTCACCACTGTTAATTTACCCTCTGAAGAATTTCCTCCTTTTATTCCGGAACCTGCACTGGGCATAAATCTTGCTAGGGATGGGATGCAAAGAAAGGACTGGCTATCTTTAGTTGCTGTTCACAGTGATGCATGGCTACTCTCTGTGGCATTCTTCTTTGGAGCAAGATTTGGTTTTGATAAATCTGACAGGACACGCCTGTTCACTAGTATTAATGATCTGCCAACAGTATTTGAGGTTGTGACTGGAACTGCAAAGAAACAGGAAAAGGAAAAGCCATCAGTTTTAAACCACAACAACAACAAATCAAACTCCAGTGCAAACGGGCGAGGATCTGAATCGGGGGAGTATTCAAAGCAAACAAGGGGTGACAATGAGGGATTGGATGAAGATGAGGAGTATGGGGATGGTTCGTGTGGCTTATGTGGGGGAAACTATACACCTACATCTGATAAGTTCTGGATTTGTTGTGACATGTGTGACAGGTGGTTCCATGGCATGTGTGAAGATCACTCCTGCCCGGGCCCTTCACCTCAAAGAATACAAGTGCCCCCTTTGCAGCAAATAAGAGAGCCAGGCCTTGGTATATATCATAGGATAGGGATGTGGATTAGTTTCTCATCCCTGTAA 849 0.4511 MQKSKIGCHNPIRNLKIQQNDTKLKALQRVLEPTNREKRVRREVMDGEEQYNPRSIEAVFRDFKGRRTGLIKALTTVNLPSEEFPPFIPEPALGINLARDGMQRKDWLSLVAVHSDAWLLSVAFFFGARFGFDKSDRTRLFTSINDLPTVFEVVTGTAKKQEKEKPSVLNHNNNKSNSSANGRGSESGEYSKQTRGDNEGLDEDEEYGDGSCGLCGGNYTPTSDKFWICCDMCDRWFHGMCEDHSCPGPSPQRIQVPPLQQIREPGLGIYHRIGMWISFSSL. 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03920 282 SUPERFAMILY FYVE/PHD zinc finger 196 244 IPR011011 -
Seca5g03920 282 PANTHER CPG BINDING PROTEIN 52 76 IPR045104 GO:0006355|GO:0042393
Seca5g03920 282 MobiDBLite consensus disorder prediction 161 204 - -
Seca5g03920 282 MobiDBLite consensus disorder prediction 170 189 - -
Seca5g03920 282 Pfam Alfin 77 156 IPR021998 GO:0006355|GO:0042393
Seca5g03920 282 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 202 245 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03920 Seca-Chr5 96291327 96295639 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03920 47 256 Alfin-like Transcription Factor Family AT3G42790 44.048 9.99e-62 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03920 K26274 - rcu:8272513 275.018