Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03919 ATGAAGCCAATTCTCTTTTTGAATCATCCTGATACTGAATTCAATTGTTCACAAGTTGATCATAATCACTCAATGGCTCATGCTCCTTATCCTTATGGAGATCCAATTTTTGCTAGTTCATTAGTTGCTTATGGACCACAGGCTGTTAATCAACAACAAATGTTGCCCCAGATGCTGGGATTAGCATCCACCAGAGTTGCATTACCACTTGATATTGCACAAGATGGGCCTATTTATGTCAATGCAAAACAATACCATGGTATACTGAGAAGGCGACAGTCACGAGCAAAGCTTGAGGCTCAGAACAAACTCATTAAAAGTCGTAAGCCATATCTCCACGAGTCTCGGCACCGCCATGCTTTAAATCGGGTTAGGGGATCTGGGGGGCGATTTCTCAGCACCAAACAGCTTACACAGTCTAATACAGAATATGTGACTGGTGCACATTCTGGCTCTGGCCCTGTCAACAAATATCAAAAGGAAGATCTATCAAATGTAGAAAGTCATTCCTCAAAAACTGGTGATAATGCATCTTCCATCACAACCTGCTCTGACCGGACATGTTTTTCTGGTAATAGTGTCAATTTTAGGCAGCCAGAGCACATGTTTCTGGGGAACTCTACAAACATGAGTGGAGCACAACATGGACTCACCTTTGGTGGAACAAAGCAACGTGCTTCAGTTGTCCGGTGA 693 0.43 MKPILFLNHPDTEFNCSQVDHNHSMAHAPYPYGDPIFASSLVAYGPQAVNQQQMLPQMLGLASTRVALPLDIAQDGPIYVNAKQYHGILRRRQSRAKLEAQNKLIKSRKPYLHESRHRHALNRVRGSGGRFLSTKQLTQSNTEYVTGAHSGSGPVNKYQKEDLSNVESHSSKTGDNASSITTCSDRTCFSGNSVNFRQPEHMFLGNSTNMSGAQHGLTFGGTKQRASVVR. 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03919 230 MobiDBLite consensus disorder prediction 162 181 - -
Seca5g03919 230 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 77 131 IPR001289 GO:0003700|GO:0006355
Seca5g03919 230 PRINTS CCAAT-binding transcription factor subunit B signature 108 131 IPR001289 GO:0003700|GO:0006355
Seca5g03919 230 PRINTS CCAAT-binding transcription factor subunit B signature 77 99 IPR001289 GO:0003700|GO:0006355
Seca5g03919 230 ProSiteProfiles NF-YA/HAP2 family profile. 74 134 IPR001289 GO:0003700|GO:0006355
Seca5g03919 230 ProSitePatterns NF-YA/HAP2 subunit signature. 79 99 IPR018362 GO:0003677|GO:0016602
Seca5g03919 230 Gene3D - 74 136 - -
Seca5g03919 230 SMART cbf3 73 134 IPR001289 GO:0003700|GO:0006355
Seca5g03919 230 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 10 186 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03919 Seca-Chr5 96286771 96291180 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03919 24 140 CCAAT-HAP2 Transcription Factor Family AT1G17590 59.322 2.05e-38 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Seca5g03919 CBFB_NFYA 3.1e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03919 K08064 - gmx:100793856 370.163