Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03914 ATGGAAGAAGAAAAAGACGTGACAGACAAGAAAGGGACAAAGAACGAGGTTGTTCTGCAAATTTCAGGCAACGAAGAAGCTTTCTATGCAAAGAAGGAACGCAGAGATTTTAGAGGTTCCCCACTTGCTGAAAGCAGTTCCTTGTCTCCTCAGTTCAATTCCCAGATGGGTTCATCTTCATCGCCAAAAGGGTTCAGAGATTCAAACGGTGAACTCATAGAGCTTGAGAATCTCAGAAACAGGGGTCAAGTTTCCACAGAGTTGGTAACAACTACAAGGAAGTTGTTGGGTCGGTCGGAGTTCTCGAAGCCAAAGTCCAGAATGGTGGAGCCACCATATCCTAAAGATGCAAACTTTGTTGAGGAGAAGACTCAAATGAAGAGTTCCAATTCATCTGCAAGGAATTCTCCTAACAAGAAGTTTGCAGCTACTCCTCCAAGGGATGTTTCTGATGCAACTCTTAGTACCCCTCGCACCCCGTTGATTGGGACTCCAGGGGAAGAAGAAGATGAAGATGAAGAAGTGTACAAGAGTGCAGATATTGAAGTGACCAAGAGATCTGGTAAGAAGTGGAAACTAAGGGGTTTGATTGAGTGGTTTGCTTTTGTTTGCATTGTGGGGTTTTTAATTGCAAGCTTGACGGTTCATAAGTTGCAACATAAGGGAATTTGGGGTTTGGAACTGTGGAAGTGGTGTGTTCTGGTATTGGTTATCCTCTGTGGTAGACTGTTCACTGAGTGGTTCATCAATGTTCTAGTTTTCATGATTGAAAGGAACTTCTTGTTTAAGAAGAAGGTTTTGTATTTTGTTTATGGCGTGAAGAATAGTGTTCAGGCCTTTTTATGGTTAAGTTTGGTGCTTTTGGCATGGGGTCTACTTTTCAACCATGGAGTCAAGAGAACTAGAAAAGTTACTAGGATTCTCAATTATATTACTAGGGCCCTTGCCTCTTGTCTTATTGGAGCAGCTATATGGTTAGCAAAAACATTGTTGATAAAGCTATTATCTTCATATTTCCAATCTACTAGATTTTTTGACAGGGTTCAAGAATCAATCTTTCATCAGTACATTCTTAGGACTCTTTCTGGCCCTCCTTTGATGGATATGGCTGCAACAGTAGGCAAGACTTCAAGTAGTGGTAGACTCAGTTTCAAGACCTTGATTAGAGATAAAGAGAATGAAGGGAAGAAAGAACAAGTCATTGATGTTGACAAGCTCAAGAAAATGAAACAAGAGAAAGTATCTGCTTGGACAATGAGAGGGTTGATTAATGTGATAAGGAGTTCTGGATTGTCTACCATCTCCTATACACCAGAGAGTGTTGATGAAGATGAGAGTGACCAGAAAGATAATGAAATTACTAGTGAGTGGGAAGCAAAGGCAGCTGCTTATAGAATTTTCAGGAATGTAGCCAAGCCAGGAAACAAGTACATTGAGAAGGAGGACCTCTTGCGCTTCATGAAAAATGAAGAAGTGGAAAATGTGCTTCCACTGTTTGAAGGGGCAGTTGAGACTGGAAAAATTAAGAGGAAGTCTCTGAAGAACTGGCTGTTAAATGCTACAAGCATGATGCTCACATATTATTCTTGTTTGCAGGTGAAAGTCTACCTTGAACGCCAATCACTTGTACATTCACTAAATGATGCCAAAACAGCAGTTGATGAATTGAATAGGCTTACTTCTGTAGTTGTCTTTATAGTGATCATTATTGTGTGGTTACTTTTAATGGGATTCTTAACAACCCAAGTTCTTGTCTTTATTTCATCCCAGCTTTTACTTGTGGTGTTTATGTTTGGAAACACAGCTAGGACTGTATTTGAAGCTATTGTATTTGTTTTTGTGATGCACCCATTTGATGTTGGTGATCGTTGTGTCATTGATGGTGTTCAGATGGTTGTAGAAGAGATGAACATACTGACTACAGTCTTTTTGAGATATGACAATGAAAAGATATTCTACCCAAATTCAGTTCTAGCAACCAAGCCAATCAGTAACTTCTACAGGAGTCCAGAAATGAGTGATTCAGTTGAATTTGCTGTTGATGTTTCTACTTCAATAGAAAGTATTGGAGCTTTAAAGGCTAGGTTAAAAACATACTTGGAGAATAGGCCTCAACACTGGCGTCCGAACCACAGTGTAATAGTTAAGGATATTGAGAATGTAAACAAGATGAAAATGGCTCTATATGTTACTCACACCATAAATTTTCAAAACTATGGGGATAAGAACAGCCGAAGATCTGAATTAGTCCTGGAGTTAAAGAAAAATCTTGAAGATCTTAATATCAAATATCATCTGTTGCCACAAGAAGTTCATCTCAGTTATGTAAGGTCAGAACACTTGACAGCACCAACAGTTTGA 2361 0.3935 MEEEKDVTDKKGTKNEVVLQISGNEEAFYAKKERRDFRGSPLAESSSLSPQFNSQMGSSSSPKGFRDSNGELIELENLRNRGQVSTELVTTTRKLLGRSEFSKPKSRMVEPPYPKDANFVEEKTQMKSSNSSARNSPNKKFAATPPRDVSDATLSTPRTPLIGTPGEEEDEDEEVYKSADIEVTKRSGKKWKLRGLIEWFAFVCIVGFLIASLTVHKLQHKGIWGLELWKWCVLVLVILCGRLFTEWFINVLVFMIERNFLFKKKVLYFVYGVKNSVQAFLWLSLVLLAWGLLFNHGVKRTRKVTRILNYITRALASCLIGAAIWLAKTLLIKLLSSYFQSTRFFDRVQESIFHQYILRTLSGPPLMDMAATVGKTSSSGRLSFKTLIRDKENEGKKEQVIDVDKLKKMKQEKVSAWTMRGLINVIRSSGLSTISYTPESVDEDESDQKDNEITSEWEAKAAAYRIFRNVAKPGNKYIEKEDLLRFMKNEEVENVLPLFEGAVETGKIKRKSLKNWLLNATSMMLTYYSCLQVKVYLERQSLVHSLNDAKTAVDELNRLTSVVVFIVIIIVWLLLMGFLTTQVLVFISSQLLLVVFMFGNTARTVFEAIVFVFVMHPFDVGDRCVIDGVQMVVEEMNILTTVFLRYDNEKIFYPNSVLATKPISNFYRSPEMSDSVEFAVDVSTSIESIGALKARLKTYLENRPQHWRPNHSVIVKDIENVNKMKMALYVTHTINFQNYGDKNSRRSELVLELKKNLEDLNIKYHLLPQEVHLSYVRSEHLTAPTV. 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03914 786 Gene3D - 617 666 IPR023408 -
Seca5g03914 786 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 6 775 IPR016688 -
Seca5g03914 786 MobiDBLite consensus disorder prediction 42 66 - -
Seca5g03914 786 MobiDBLite consensus disorder prediction 119 170 - -
Seca5g03914 786 SUPERFAMILY Sm-like ribonucleoproteins 607 666 IPR010920 -
Seca5g03914 786 FunFam Predicted mechanosensitive ion channel 617 666 - -
Seca5g03914 786 Pfam Mechanosensitive ion channel 558 763 IPR006685 GO:0016020|GO:0055085
Seca5g03914 786 MobiDBLite consensus disorder prediction 30 78 - -
Seca5g03914 786 PIRSF Memb_At2g17000 1 785 IPR016688 -
Seca5g03914 786 MobiDBLite consensus disorder prediction 123 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03914 Seca-Chr5 96225742 96229399 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03914 38 774 Mechanosensitive Ion Channel Family AT5G12080 50.676 0.0 730
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03914 K22048 - gmx:100777332 1222.61