Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03912 ATGTCGGTGAATCTGACGGCGAACGCGATTCCGGCGATAATTGGCGGTGACGTGAACGCGAAGCCATTGGTTCAGGTTCTGGACATGTCGTTAATCTCCAATAGCAATAACTCGCAGCAGCAGAGATACCGTCTTCTGCTTTCCGACGCCGTTTCGTCCCACCAAGCCATGCTCGCCGCTCAGCTCAACGACCGAATCCGAACCGGCCGAGTTAAGAAAGGTTCCGTCGTTCAGCTTATCGACTATATATGCAGTCCTCTCTACAACCGCAAGATTATTGTGGTGCTCAACATGGAAACTATAATACCAGATTGTGTGATCATTGGGAATCCGAAGCCATTTGCGGATTCTGATTTACCAGCTCAGAGATCGTTACCTGATAACACTGTGGAGAATTCATCCAGAAGTAGTAATAACAATTTGGCTGCTCAAAATGTAAGTCATAATGTGCAGAATTTCAGACCAACAATTCAACCTCCATACCAACCACCTCCTGTTTACAAAGGCCGTGGGGCAATTGTGAAAAATGAGGCACCAGCACGAGTCATTCCTATAGCTGCTTTAAATCCTTATCAAGGTAGATGGGCCATCAAAGCAAGGGTAACTGCTAAAGGAGATCTCCGCCGTTATAACAATGCTCGCGGAGATGGGAAAGTCTTCTCATTTGATCTTCTTGATTCTGATGGAGGTGAAATACGAGTAACCTGCTTTAATGCTGTTGTTGATCACTTCTATGATGCAATTGAGGTTGGTAAAGTCTACTTGATATCCAAAGGTAGCTTGAAACCTGCACAGAAGAATTTCAACCATTTGAAAAATGAATGGGAAATTTTTTTGGATTTAAATTCAACTGTTGAGCTTTGCCCTGACGAGGATGCTTCTATACCTAGACAGCAGTTCTCCTTCAGGCCTATCAGTGACATTGAGAGTGTTGACAGTAACTCCATTCTTGATGTTATTGGGGTAGTGACATCTGTGAATCCTTCAGTTCCCATCTTGAGGAAGAATGGGATGGAGACTCAGAGAAGAATTTTGAATCTAAAAGACAGTTCTGGCAGGAGTGTTGAGCTAACACTTTGGGGTGAGTTCTGCAACAGGGAAGGACAAAAGCTGCAAGAGATGGTGGATGCTGGGTTTTTCCCCATTTTGGCAGTGAAAGCTGGGAAGGTTAATGACTTTAGTGGAAAGACTATTGGCTCTATCTCTACTACACAGCTTTTCATAAATCCAGATTTCCCTGAAGCTCTTAGCTTAAGAGACTGGTTTGATCGAGTGGGAAAAGATTCTGCTTCTCTATCCATTTCTAAGGACATTATTCCTGGAGGACCGAAGAATGAGAGACGCAAAACTGTGTCTCAGATCAAAGATGAAGGCCTGGGGCGGTCAGACAAGCCAGACTGGATAACAGTGAGGGCTACCATTTCCTTCATCAAGACCGATACATTTTGTTACACAGCTTGTCCTCTAATGATTGGAGATCGACAGTGCAATAAGAAAGTAACTAAGTCAGGAAACACAAGATGGCAATGTGATAGATGCAACCAAGAATTTGAGGAGTGTGATTATCGATACCTTCTCCAAGCTCAAATCCTTGATCATACAGGATTAACTTGGGTAACTGCTTTTCAGGAAGCAGGGGAAGAGATTATGGGGTACTCGGCAAAGGAGCTGTACCTGTTGAAGTATGAACAGGAGGATGATGAGAGGTTTGGAGAGATAATCAAGAGTAGACTCTTCAACCAGTTTGTATTTAGGCTGAAAATCAAAGAAGAGTTATATGGCGATGAGCAGAAGGTGAAGATTACAGTAGTCAAGGCAGATAAGGTGAATTATTCTTCGGAGAGTAGATGCATGCTTGATTTGATTTCCAAGTTTTGTAGGCAGTAA 1887 0.4335 MSVNLTANAIPAIIGGDVNAKPLVQVLDMSLISNSNNSQQQRYRLLLSDAVSSHQAMLAAQLNDRIRTGRVKKGSVVQLIDYICSPLYNRKIIVVLNMETIIPDCVIIGNPKPFADSDLPAQRSLPDNTVENSSRSSNNNLAAQNVSHNVQNFRPTIQPPYQPPPVYKGRGAIVKNEAPARVIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDHFYDAIEVGKVYLISKGSLKPAQKNFNHLKNEWEIFLDLNSTVELCPDEDASIPRQQFSFRPISDIESVDSNSILDVIGVVTSVNPSVPILRKNGMETQRRILNLKDSSGRSVELTLWGEFCNREGQKLQEMVDAGFFPILAVKAGKVNDFSGKTIGSISTTQLFINPDFPEALSLRDWFDRVGKDSASLSISKDIIPGGPKNERRKTVSQIKDEGLGRSDKPDWITVRATISFIKTDTFCYTACPLMIGDRQCNKKVTKSGNTRWQCDRCNQEFEECDYRYLLQAQILDHTGLTWVTAFQEAGEEIMGYSAKELYLLKYEQEDDERFGEIIKSRLFNQFVFRLKIKEELYGDEQKVKITVVKADKVNYSSESRCMLDLISKFCRQ. 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03912 628 MobiDBLite consensus disorder prediction 118 139 - -
Seca5g03912 628 CDD RPA1_DBD_A 184 287 - -
Seca5g03912 628 Pfam OB-fold nucleic acid binding domain 196 276 IPR004365 GO:0003676
Seca5g03912 628 NCBIfam replication factor-a protein 1 (rpa1) 4 624 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Seca5g03912 628 MobiDBLite consensus disorder prediction 122 139 - -
Seca5g03912 628 CDD RPA1N 9 102 IPR007199 GO:0003677|GO:0005634|GO:0006260
Seca5g03912 628 Pfam Replication factor-A C terminal domain 467 616 IPR013955 -
Seca5g03912 628 SUPERFAMILY Nucleic acid-binding proteins 182 295 IPR012340 -
Seca5g03912 628 FunFam Replication protein A subunit 4 115 - -
Seca5g03912 628 PANTHER REPLICATION FACTOR A 1, RFA1 195 603 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Seca5g03912 628 FunFam Replication protein A subunit 294 432 - -
Seca5g03912 628 Gene3D - 3 115 IPR012340 -
Seca5g03912 628 Gene3D - 181 291 IPR012340 -
Seca5g03912 628 Pfam Replication protein A OB domain 305 409 IPR031657 -
Seca5g03912 628 SUPERFAMILY Nucleic acid-binding proteins 299 426 IPR012340 -
Seca5g03912 628 CDD RPA1_DBD_C 451 624 IPR047192 -
Seca5g03912 628 Gene3D - 437 626 IPR012340 -
Seca5g03912 628 Gene3D - 294 432 IPR012340 -
Seca5g03912 628 SUPERFAMILY Nucleic acid-binding proteins 447 625 IPR012340 -
Seca5g03912 628 FunFam Replication protein A subunit 433 625 - -
Seca5g03912 628 CDD RPA1_DBD_B 316 423 - -
Seca5g03912 628 FunFam Replication protein A subunit 181 290 - -
Seca5g03912 628 Pfam Replication factor-A protein 1, N-terminal domain 5 101 IPR007199 GO:0003677|GO:0005634|GO:0006260
Seca5g03912 628 SUPERFAMILY Nucleic acid-binding proteins 1 110 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03912 Seca-Chr5 96214151 96216862 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03912 26 624 Core DNA Replication Machinery Family AT2G06510 69.919 0.0 899
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03912 K07466 - gmx:100792409 1073.92