Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03906 ATGATGGCGAACCCAACCAAGAAGAGCAGGGGTCGTCAAAAGATCGAGATGAAGAAGATGAGCAACGAGAGCAACTTGCAAGTGACTTTCTCGAAGCGTCGTAGTGGGCTCTTCAAGAAAGCCAGCGAGCTTTGCACTCTATGTGGTGGTAATGTTGCTATCATTGTGTTCTCACCCGGTGAGAAGGTATTCTCCTTTGGCCACCCCAATGTCGATGCGGTTATCAATCGCTATCTGACGGGGATCCCACCGCAAAACTCGGGCACCATGCAGTTCATTGAGGCTCACCGCAATGCCAATGTGTGTGAGTTGAACGCGCAATTGGCTCAGATCAATAACCAACTTGAGAGTGAGAGGAAGCATGGTGATGAGTTGAACCGTATGCGGAAAGCAGCGCAGGCTCAGTTCTGGTGGGCTTATCCCATTGAGGAGATTAATAGAGTTCAACTTGAACAATTCAAGTTGGCCTTAGAGGAGCTTAAGAAACATGTTACTAACTATTTTGACAGACTCCTCATTCAAGGTGCTGCTTCTGCTGCTGCCACCAACCCAACTCATCATCATCCTATTTTTACTGTTGCACCACCTGCTGGCTCCTCTTCCCACCTCTCTCTCCTTCAGCCACCTCCTCCACCTCAGGTGTTTCCACCGCAGTTCTTTCAGAACCCTATGCTGCAAAATCATTTGTTTGATCATGGGAGCTTGATGCACCACCCCATGATGGCGAACCCAACCAAGAAGAGCAGGGGTCGTCAAAAGATCGAGATGAAGAAGATGAGCAACGAGAGCAACTTGCAAGTGACTTTCTCGAAGCGCCATAGTGGGCTCTTCAAGAAAGCCAGCGAGCTTTGCACTCTATGTGGTGGTAATGTTGCTATCATTGTGTTCTCACCCGGTGAGAAGGTCTTCTCCTTTGGCCACCCCAATATCGATGCGGTTATCAATCGCTATCTGACGGGGATCCCACCTCAAAACTCGGGCACCATGCAATTCATTGAGGCTCACCGCAATGCCAATGTGTGTGAGTTGAACGCGCAATTGGCTCAGATCAATAACCAACTTGAGAGTGAGAGGAAGCATGGTGATGAGTTGAACCGTATGCGGAAAGCAGCGCAGGCTCAGTTCTGGTGGGCTTATCCAATTGAGGAGATTAATAGAGTTCAACTTGAACAATTCAAGTTGGCCTTAGAGGAGCTTAAACTCCTCATTCAAGGTGCTGCTTCTGCTGCTGCCACCAACCCAACTCATCATCATCCTATTTTTACTGTTGCACCACCTGCTGGCTCCTCTTCCTACCTCTCTCTCGTTCAGCCACCTCCTCCACCTCAGGTGTTTCCACCGCAGTTCTTTCAGAACCCTATGCTGCAGAATCATTTGTTTGATCATGGGAGCTTGATGCACCACCATGGATTTAACAACTTGGGAGGGTATGGAACTCCTAGATTCTTCTGA 1452 0.4876 MMANPTKKSRGRQKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGGNVAIIVFSPGEKVFSFGHPNVDAVINRYLTGIPPQNSGTMQFIEAHRNANVCELNAQLAQINNQLESERKHGDELNRMRKAAQAQFWWAYPIEEINRVQLEQFKLALEELKKHVTNYFDRLLIQGAASAAATNPTHHHPIFTVAPPAGSSSHLSLLQPPPPPQVFPPQFFQNPMLQNHLFDHGSLMHHPMMANPTKKSRGRQKIEMKKMSNESNLQVTFSKRHSGLFKKASELCTLCGGNVAIIVFSPGEKVFSFGHPNIDAVINRYLTGIPPQNSGTMQFIEAHRNANVCELNAQLAQINNQLESERKHGDELNRMRKAAQAQFWWAYPIEEINRVQLEQFKLALEELKLLIQGAASAAATNPTHHHPIFTVAPPAGSSSYLSLVQPPPPPQVFPPQFFQNPMLQNHLFDHGSLMHHHGFNNLGGYGTPRFF. 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03906 483 ProSiteProfiles MADS-box domain profile. 10 70 IPR002100 GO:0003677|GO:0046983
Seca5g03906 483 PANTHER MADS BOX PROTEIN 12 165 - -
Seca5g03906 483 Coils Coil 347 367 - -
Seca5g03906 483 SMART madsneu2 10 69 IPR002100 GO:0003677|GO:0046983
Seca5g03906 483 SMART madsneu2 249 308 IPR002100 GO:0003677|GO:0046983
Seca5g03906 483 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 258 305 IPR002100 GO:0003677|GO:0046983
Seca5g03906 483 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 19 66 IPR002100 GO:0003677|GO:0046983
Seca5g03906 483 Coils Coil 108 128 - -
Seca5g03906 483 CDD MADS_MEF2_like 250 320 IPR033896 GO:0000977|GO:0045944
Seca5g03906 483 PRINTS MADS domain signature 47 68 IPR002100 GO:0003677|GO:0046983
Seca5g03906 483 PRINTS MADS domain signature 12 32 IPR002100 GO:0003677|GO:0046983
Seca5g03906 483 PRINTS MADS domain signature 32 47 IPR002100 GO:0003677|GO:0046983
Seca5g03906 483 CDD MADS_MEF2_like 11 81 IPR033896 GO:0000977|GO:0045944
Seca5g03906 483 FunFam Agamous-like MADS-box protein AGL62 261 327 - -
Seca5g03906 483 Gene3D - 261 327 IPR036879 GO:0003677|GO:0046983
Seca5g03906 483 Gene3D - 22 88 IPR036879 GO:0003677|GO:0046983
Seca5g03906 483 MobiDBLite consensus disorder prediction 1 23 - -
Seca5g03906 483 SUPERFAMILY SRF-like 250 322 IPR036879 GO:0003677|GO:0046983
Seca5g03906 483 Gene3D - 89 178 - -
Seca5g03906 483 Gene3D - 328 413 - -
Seca5g03906 483 ProSiteProfiles MADS-box domain profile. 249 309 IPR002100 GO:0003677|GO:0046983
Seca5g03906 483 SUPERFAMILY SRF-like 11 83 IPR036879 GO:0003677|GO:0046983
Seca5g03906 483 FunFam Agamous-like MADS-box protein AGL62 22 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03906 Seca-Chr5 96155401 96163856 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03906 245 408 Type I MADS-box Gene Family AT5G60440 58.683 3.07e-58 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Seca5g03906 SRF-TF 1.1e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03906 - - gmx:100794751 275.789