Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03900 ATGGAAGACATCCTGGAACGATATGAGAGGAAAAACCATACAGAACTTGCTGGAGCTAACAATGAAACACAGGGAAACTGGTCTTTCGAGTACACCAAGCTCACTGCTAAAGTTCAAGTCTTGGAGAAGAACATAAGGAACTACGTGGGACAAGATCTGGATCCCTTAAGTACGAAAGAGCTTCAGAGTTTGGAGCAACAACTTGACACATCTCTTAAGCGCATCCGAACAAGAAAGGACCAAGTTATGAATCAATCCATCTCGGAGCTGCATAAAACGGCAAGGGCATTGCAGGAGCAAAACAGCAAGCTAGCAAAGATGAAGGAGAAAGAGAAGACATTAATTGAACGTCCATCCAGCTTCCCAGAAACCATAGGCCAATGTTCATCCACCTTTAACTTATTTTCTCCGGAGGTACTGCCACCACAAAGACTGGTTCCTTCACTAAATCTCAGTGGGACTTTACAAGGAAGAGCATCGGTGGAAGAAATGGCTGAAGGTCAAACCATCCCTAGTAGCAGTGCTCTGATTCCACCATGGATGCTGCATCATCTGACTAGTTAG 564 0.4468 MEDILERYERKNHTELAGANNETQGNWSFEYTKLTAKVQVLEKNIRNYVGQDLDPLSTKELQSLEQQLDTSLKRIRTRKDQVMNQSISELHKTARALQEQNSKLAKMKEKEKTLIERPSSFPETIGQCSSTFNLFSPEVLPPQRLVPSLNLSGTLQGRASVEEMAEGQTIPSSSALIPPWMLHHLTS. 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03900 187 Pfam K-box region 22 107 IPR002487 GO:0003700|GO:0005634|GO:0006355
Seca5g03900 187 Coils Coil 31 51 - -
Seca5g03900 187 Coils Coil 87 117 - -
Seca5g03900 187 Coils Coil 61 81 - -
Seca5g03900 187 ProSiteProfiles K-box domain profile. 24 114 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03900 Seca-Chr5 96118694 96121207 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03900 1 187 MADS-box Gene Family AT5G60910 43.077 3.25e-37 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03900 K09264 - gmx:100788956 239.965