Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03899 ATGGAAAGGAAACAGGCCTGTTGTGAAAAACATTTGTTGAAAAGAGATGCTTGGTCTTCTATGGAAGACGAGATCCTTATGAACTATGTTCAAGTCTATGGAGAAGGAAATTGGAGAGACCTTCCCAAAAGAGCTGGCTTGAACCGATGTGGTAAGAGTTGCGAACTCCGATGGTTGAATTATCTGAAACCAGCTGGGATCAATGGAGGAAACATTTCTTTGGATGAAGAAGAGCTCATAATCAGACTACATAAGCTCTTAGGGAACAGATGGTCTATCATTGCGGGACGATTGCCAGGACGGACTGAAAATGAGATAGAGAACTTTTGGAATACCCATTTGAGCAAAAAGATGAAAGATGATAATTACAATAATAATGGACTTCCAAATACAAGTGGCATATCTAGTGTTAAATCTTCTCACCCTGGAATAATTAAACCTCAGGCACGAAGGTGTAAGCAAGGTTATCGTGCTCAACATCACGGATTTAACTGGCTGGGATAG 504 0.4067 MERKQACCEKHLLKRDAWSSMEDEILMNYVQVYGEGNWRDLPKRAGLNRCGKSCELRWLNYLKPAGINGGNISLDEEELIIRLHKLLGNRWSIIAGRLPGRTENEIENFWNTHLSKKMKDDNYNNNGLPNTSGISSVKSSHPGIIKPQARRCKQGYRAQHHGFNWLG. 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03899 167 Gene3D - 73 138 - -
Seca5g03899 167 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 118 IPR017930 -
Seca5g03899 167 CDD SANT 73 114 IPR001005 -
Seca5g03899 167 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Seca5g03899 167 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 4 136 - -
Seca5g03899 167 SMART sant 68 116 IPR001005 -
Seca5g03899 167 SMART sant 14 64 IPR001005 -
Seca5g03899 167 FunFam MYB-related transcription factor 14 66 - -
Seca5g03899 167 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Seca5g03899 167 SUPERFAMILY Homeodomain-like 14 110 IPR009057 -
Seca5g03899 167 Gene3D - 12 65 - -
Seca5g03899 167 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Seca5g03899 167 Pfam Myb-like DNA-binding domain 72 114 IPR001005 -
Seca5g03899 167 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 66 IPR017930 -
Seca5g03899 167 CDD SANT 17 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03899 Seca-Chr5 96105289 96108412 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03899 2 118 MYB Transcription Factor Family AT3G13540 61.538 1.88e-50 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca5g03899 Myb_DNA-binding 6.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03899 K09422 - nnu:104609953 191.815