Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03895 ATGATGAACGGAAGAAACAGGTTCCCCTTTACTCCATCACAATGGCAAGAGCTTGAACATCAAGCTCTTATCTACAAGTACATGGCTTCAGGTATCTCTATTCCACCTGATCTTCTCTTCACTATTAGAAGGAGCTATTTGGATTCTCCTTTGTCTACTAGGCTTTTGCCTAACCAGCCACAACATTTTGGATGGAACTATCTTCAGATGGGTTTGGGAAGAAAAATAGACCCTGAGCCAGGTAGGTGTAGAAGAACAGATGGGAAGAAATGGAGATGCTCAAAAGAGGCATATCCAGATTCTAAGTACTGTGAGAGGCACATGCACAGAGGAAAAAACCGTTCAAGAAAGCCTGTGGAAGTTTTGAAAACAACAAACACAAATGCTTCAATATCTGCAATCTCATCAATCACTAAAAATAGTCCTGCACTAACCCCAACCACTCATTCTCTTTCACCCTTTACATCTTCTTCTCTGTCCTCTCACTCCTTTCTCTATCATCACCAACCTTCAAGGTCATCTGGTATTGGTTTGTCATTTGAAGACAATAGTGCTCCTTTGTTTCTTGACACTGGCTCTTGCTCTCAGACTAACACAGATTGCAGGAACAGGTATGTTTATGGACAGAAAGAGGAGGTGGATGAGCATGCTTTCTTCACAGAGCCTTCTGGTATTATGAAAAGCTTCTCTGCTTCCTCTATGGATGATGCTTGGCAACTCACACCACTTACTATGAGCTCTTCATCTTCTTCTTCAAAACAGAGGAGTTGCTCTGCTTTGTCCAATGATTACTCTTACTTGCAACTTCAGAGCCTCAGTGACCACTCAAAACAGCAAGAGCAAGATCAGAACTGCTACATATTAGGAGGGAAACTTGAAAAAGAAGAACCTCAGAAAACAGTTCACCGTTTCTTTGATGAATGGCCCCACAAAGGAAGAGGCTCATGGCTTGATTTGGATGATAAATCATCCACCACCCAACTATCAATTTCCATTCCCACATCTGCTCATGATTTTCCAACCTTCAATTCCAGAACCCACCATGGTAAATGGTTGAGCATAGCTTTCAATAATGGGGTCCCCTTGTACCTGAGTCAAAGGCCAATAATGTATGTATCTACAAGGAGGGGTTCAGAAGCTGTGAAAGTCTTCCTTCAATTGCTCCCCTCTTTATTTATCTGTCATAAAGGCAGTTGA 1197 0.4202 MMNGRNRFPFTPSQWQELEHQALIYKYMASGISIPPDLLFTIRRSYLDSPLSTRLLPNQPQHFGWNYLQMGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVLKTTNTNASISAISSITKNSPALTPTTHSLSPFTSSSLSSHSFLYHHQPSRSSGIGLSFEDNSAPLFLDTGSCSQTNTDCRNRYVYGQKEEVDEHAFFTEPSGIMKSFSASSMDDAWQLTPLTMSSSSSSSKQRSCSALSNDYSYLQLQSLSDHSKQQEQDQNCYILGGKLEKEEPQKTVHRFFDEWPHKGRGSWLDLDDKSSTTQLSISIPTSAHDFPTFNSRTHHGKWLSIAFNNGVPLYLSQRPIMYVSTRRGSEAVKVFLQLLPSLFICHKGS. 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03895 398 PANTHER GROWTH-REGULATING FACTOR 5 8 338 IPR031137 GO:0005634|GO:0006351|GO:0032502
Seca5g03895 398 SMART QLQ_2 8 44 IPR014978 GO:0005524|GO:0005634|GO:0006355
Seca5g03895 398 ProSiteProfiles QLQ domain profile. 9 44 IPR014978 GO:0005524|GO:0005634|GO:0006355
Seca5g03895 398 Pfam QLQ 9 43 IPR014978 GO:0005524|GO:0005634|GO:0006355
Seca5g03895 398 Pfam WRC 78 120 IPR014977 -
Seca5g03895 398 ProSiteProfiles WRC domain profile. 77 121 IPR014977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03895 Seca-Chr5 96046718 96048827 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03895 7 120 GRF Transcription Factor Family AT3G13960 71.930 5.83e-55 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Seca5g03895 WRC 8.6e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03895 - - gmx:100781613 563.148