Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03892 ATGGAAAAGTACGAGAAGTTGGAGAAGGTTGGAGAAGGCACTTACGGAAAAGTGTACAAGGCTAAGGAGAAAGCCACTGGCAAAATTGTTGCCCTGAAAAAGACCCGTCTGGAGATGGATGAGGAAGGTGTCCCTCCCACTGCCCTTCGAGAGGTCTCTCTCCTTCAGATGCTCTCTCAATCCATTTACACCGTCCGTCTCCTCAACGTCGAGCACGTCGACAAGGCCTCTAAGTCTGCCCTTCAAACCAAGCCCCTCCTCTATCTCGTCTTCGAGTATCTCGACACCGATCTCAAAAAATTCATCGATACTCACCGCAAGGGCTCAAACCCTAAACCCCTTTCCCCTACACTCATTCAGAGCTTCCTCTTCCAGCTTTTGAAGGGCGTCGCTCACTGCCACAGCCACGGTGTCCTCCACCGCGATCTCAAGCCACAGAACCTCCTTCTCGATCAGCAAAAAGGCATTCTCAAGATCGCCGACCTTGGCCTTGGACGCGCCTTCACTGTTCCTCTCAAGAGCTACACTCATGAGATCGTCACCCTCTGGTACAGAGCTCCTGAGGTTCTCCTCGGTTCCACTCACTACTCCACCGGCGTTGACATGTGGTCCGTTGGATGCATCTTTGCTGAAATGGCGAGAAGGCAGGCTCTGTTTGCAGGGGATTCTGAATTCCAGCAGCTCCTTAACATATTCAAGATTATGGGGACTCCAACGGAGGAGCAATGGCCTGGAGTTACTTCTCTGCGTGATTGGCACGTGTACCCACGGTGGGAGCCTCAGAACTTGGCAAGGACTGTGCCCTCCTTAGGACCTCATGGAGTGGACCTTCTCTCGAAAATGCTCAAGTATAATCCTGCCGATAGAATATCTGCCAAAGCAGCACTTGAACATCCCTACTTTGAAAGTCTTGACAAGTCTCAATTTTAA 930 0.5118 MEKYEKLEKVGEGTYGKVYKAKEKATGKIVALKKTRLEMDEEGVPPTALREVSLLQMLSQSIYTVRLLNVEHVDKASKSALQTKPLLYLVFEYLDTDLKKFIDTHRKGSNPKPLSPTLIQSFLFQLLKGVAHCHSHGVLHRDLKPQNLLLDQQKGILKIADLGLGRAFTVPLKSYTHEIVTLWYRAPEVLLGSTHYSTGVDMWSVGCIFAEMARRQALFAGDSEFQQLLNIFKIMGTPTEEQWPGVTSLRDWHVYPRWEPQNLARTVPSLGPHGVDLLSKMLKYNPADRISAKAALEHPYFESLDKSQF. 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03892 309 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Seca5g03892 309 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Seca5g03892 309 Pfam Protein kinase domain 4 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g03892 309 FunFam Cyclin-dependent kinase 2 97 308 - -
Seca5g03892 309 SUPERFAMILY Protein kinase-like (PK-like) 1 304 IPR011009 -
Seca5g03892 309 SMART serkin_6 4 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g03892 309 PANTHER CELL DIVISION PROTEIN KINASE 1 302 - -
Seca5g03892 309 Gene3D Transferase(Phosphotransferase) domain 1 97 308 - -
Seca5g03892 309 ProSiteProfiles Protein kinase domain profile. 4 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g03892 309 FunFam Cyclin-dependent kinase B2,2 1 95 - -
Seca5g03892 309 Gene3D Phosphorylase Kinase; domain 1 1 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03892 Seca-Chr5 96031322 96035735 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03892 1 309 Core Cell Cycle Gene Families AT3G54180 82.848 0.0 537
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Seca5g03892 Pkinase 2.3e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03892 K07760 - gmx:100805119 559.681