Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03879 ATGACCATCATGAAAATCATATGGAAATCAATCTTCCCTGGTTGTTACAAGGGTGAATATCCCTCACCTAAGCCCAAGAAAGTGGTGGCTACAAAGCCAAATACTTCTCACAGGATTTCTGTAACAGATTTGAGTTATCCCAGCACCACATTTTCAGAGGATCTTTCCATTTCTCTAGCAGGATCTAACCTGCATGTTTTTACAGTTGCTGAACTCAAGGTTATCACACAGCACTTCTCTTCAAGTAATTTTCTAGGAGAAGGTGGTTTTGGACCAGTGCATAAGGGGTTCATTGATGACAAGCTTAGGCCTGGTTTAAAGGCTCAGCCTGTGGCTGTTAAGCTCTTGGACTTGGATGGCACTCAAGGCCACAAAGAGTGGTTGACTGAAGTTGTTTTTCTGGGGCAACTAAGGCATCCACACCTTGTGAAGCTAATAGGATACTGCTGTGAAGATGAACACAGGCTTCTGGTATATGAGTATTTACCAAGAGGCAGTTTAGAGAATCAATTATTTAGAAGTAAGTTTCTTTTTTCTTTTTCATTAGAATTTGCAGGATACTCAGCATCATTACCATGGTCAGTAAGAATGAAAATTGCTGTTGGAGCTGCAAAAGGTCTAGCTTTTCTTCATGAAGCAGAGAAACCAGTCATCTATAGAGATTTCAAAGCTTCCAACATCTTATTAGACTCTGATTACAATGCAAAACTTTCTGATTTTGGGTTGGCAAAAGATGGACCTGAAGGTGATGACACCCATGTTTCAACCAGAGTTATGGGCACACAAGGCTATGCAGCCCCAGAATATGTCATGACAGGTCACTTGACAGCAATGAGTGACGTGTATAGTTTTGGAGTTGTGCTATTGGAGTTGCTAACTGGGAGAAGATCAGTGGACAAGAATAGACCTCCAAGGGAACAGAACCTAGTGGAATGGGCAAGGCCAATGTTACATGATTCAAGGAAACTTAGTAGGATAATGGATCCTAGACTTGAAGGGCAGTTTTCTGAGATGGGAAGTAAAAAAGCAGCTGCATTGGCTTACCAATGTCTCAGCCATAGGCCAAAGAGTAGGCCTACAATGAGAGAAGTGGTTAAGATTCTAGAACCCCTACAAGATTTTGATGATATTCCAGTGGGACCCTTTGTTTACACTGTTCCAGCTGATATTAATGAAGTGAATAAAGAAACAAAGGATTATGATTCACCTAAGGAGAGAAGAAGGGAAAATAATGGTCACCATCACAGGAATCACCATAACAGAAATGGTCATAGGCATCATCCACTTAAATCTCCAAAGTCACCAAAGCCACAATCACAGAATGATAGAGTTAGACACCAAAATGGCAGAGGAAGTGGGTCTAATTCTCCTCCATCACATCAAAAGGCATAG 1392 0.4124 MTIMKIIWKSIFPGCYKGEYPSPKPKKVVATKPNTSHRISVTDLSYPSTTFSEDLSISLAGSNLHVFTVAELKVITQHFSSSNFLGEGGFGPVHKGFIDDKLRPGLKAQPVAVKLLDLDGTQGHKEWLTEVVFLGQLRHPHLVKLIGYCCEDEHRLLVYEYLPRGSLENQLFRSKFLFSFSLEFAGYSASLPWSVRMKIAVGAAKGLAFLHEAEKPVIYRDFKASNILLDSDYNAKLSDFGLAKDGPEGDDTHVSTRVMGTQGYAAPEYVMTGHLTAMSDVYSFGVVLLELLTGRRSVDKNRPPREQNLVEWARPMLHDSRKLSRIMDPRLEGQFSEMGSKKAAALAYQCLSHRPKSRPTMREVVKILEPLQDFDDIPVGPFVYTVPADINEVNKETKDYDSPKERRRENNGHHHRNHHNRNGHRHHPLKSPKSPKPQSQNDRVRHQNGRGSGSNSPPSHQKA. 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03879 463 CDD STKc_IRAK 85 371 - -
Seca5g03879 463 MobiDBLite consensus disorder prediction 409 432 - -
Seca5g03879 463 FunFam Serine/threonine-protein kinase BIK1 46 161 - -
Seca5g03879 463 MobiDBLite consensus disorder prediction 433 463 - -
Seca5g03879 463 SUPERFAMILY Protein kinase-like (PK-like) 45 368 IPR011009 -
Seca5g03879 463 FunFam Probable serine/threonine-protein kinase PBL8 162 383 - -
Seca5g03879 463 Gene3D Transferase(Phosphotransferase) domain 1 163 377 - -
Seca5g03879 463 ProSitePatterns Serine/Threonine protein kinases active-site signature. 217 229 IPR008271 GO:0004672|GO:0006468
Seca5g03879 463 ProSiteProfiles Protein kinase domain profile. 79 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g03879 463 MobiDBLite consensus disorder prediction 394 463 - -
Seca5g03879 463 Gene3D Phosphorylase Kinase; domain 1 42 161 - -
Seca5g03879 463 PANTHER OS01G0588500 PROTEIN-RELATED 48 372 - -
Seca5g03879 463 Pfam Protein tyrosine and serine/threonine kinase 83 368 IPR001245 GO:0004672|GO:0006468
Seca5g03879 463 MobiDBLite consensus disorder prediction 394 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03879 Seca-Chr5 95926231 95928507 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03879 65 368 Glycoside Hydrolase AT3G07070 51.803 1.38e-99 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Seca5g03879 PK_Tyr_Ser-Thr 6.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03879 - - gmx:100783759 732.635