Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03872 ATGGCATCTGATTCAAACGAACTTGCTTCCAGCAACACGCTCCAGTCCATATGCTACAAGCGCTGCTCACTTCAGCTTCTTGATCAGAGAAAGCTTCCTTTAGAAACAATCTACTTGAATATTCGGGATTCAACAGATGGCTGGAATGCCATACGGGATATGGTGGTCCGAGGAGCACCTGCTATTGCTATTGCAGCAGCACTCTCCCTGGCTGTGGAGGTGTCCAATTTAGATGATTTTAATGGGTCACCCAGTGATGCTGTTTCCTTACTGCAGAAGAAATTAGACTATCTTGTCTCAAGTCGGCCAACTGCAGTGAACCTATCAGATGCTGCAGCAAAACTCAACGAAGTCATATCTAAGGCTTCTGCTACAACTTCAGAGGCCGGGAGTGTTTTTCAGGCTTATGTGGAGGCTGCTGAAATTATGCTAGAGGATGACGTTGCCTCGAATAGAGCAATTGGTTCTTATGGAGCTAGTTTTATTCAACACCAAACAGAGAAACAGAAGCTTTCTGTTTTGACACATTGCAACACTGGAAGTTTAGCTACGGCTGGATATGGTACTGCTCTGGGTGTAATCCGTGCACTTCACAGTGGAGGAGTTTTAGAAAGGGCTTATTGCACAGAAACACGCCCATTCAATCAAGGATCTAGGCTTACTGCCTATGAATTGGTACATGAGAAAATACCAGCAACTCTTATAGCAGATTCTGCTGTGGCTGCCTTAATGAAAGCGGGACGTGTGGATGCTGTTGTTGTTGGGGCTGATCGTGTTGCATCAAACGGTGACACAGCCAACAAAATTGGAACATATAGTGTTGCCTTATGTGCCAAGTTTCATAATGTACCTTTTTATGTGGCTGCTCCCCTGACCTCCATTGATCTATCACTTTCTTCTGGACAAGAAATTGTCATTGAGGAGAGATCTCCCAAGGAATTGTTGAACTCACGTGGTGGACTTGGTGAGCAGGTTGCTGCCTCAGGGATTTCTGTGTGGAATCCGGCATTTGATGTTACACCTGCTAATCTAATATCTGGGATCATCACTGAGAAGGGTGTCATTACGAAGACATCTGCTGGTGATGCTTTTGACATAAAAGCTTTCATACAGAAAGCAAGTGCGCACTTTTCATTCCTTTTTCGATCTTTCGTTCTCAATTCTTTGGTTGATGAATTCGTTGAGCGACCTTCGTCTTCACAGGTTGGAATCAAAATGCAGAAGAAGTTGCTGTTGCCGTTGAACGACACCGATGCGAACAAGAAGAAGACGCCATTATACAACAGGGAAGCGTTAGTGAAGCTTCTAAGATGGCATTTTGGTTACCCCGATTTTAGGGGCATGCAATTGAAAGCTATTCAGGCTGTGCTATCAGGAAGAGATTGTTTTTGTCTCATGCCAACTGGAGGAGGCAAGTCAATGTGTTATCAGATCCCTGCATTGGCAAAAACAGGAATTGTGCTTGTTGTTTGTCCTTTAATAGGTGAATCATGTTCATCTTTTTCTAGAGACACAGCTGTGTTTTCTGACTTTTGTTCTGATGACAGCCTTAATGGTAGGCATCTTTTCAACTTTATCGAAAACCAAGTGATGGCACTAAAGGAGAAAGGGATTGCTGCGGAATTTCTTTCCTCAACAAAAACAGCAGATGCAAAAAATAAGGTAAGTGATTTTTCTGTTTTACGTTTTAAGATTCATGAAGACCTTGCTTCTGGAAAACCTTCTACAAGGCTGCTTTATGTAACTCCAGAGCTGATAGCAACACCAGGGTTTATGTCAAAGCTGACAAAGATTTATTCTAGGGGGTTGCTAAGTCTCATTGCCATAGATGAGGCACATTGCATCTCAAGTTGGGGTCATGATTTCAGACCTAGCTATCGTAAGCTTTCATCTTTGAGAAGCCACTTACCAGATGTACCAATATTAGCTCTGACCGCTACTGCTGTTCCTAAGGTTCAGAAGGATGTAGTAGAATCCTTGCATATGCAAAATCCATTAATACTTAAGTCTTCTTTTAATCGTCCTAATATATATTATGAAGTTAGATACAAAGATCTATTGGATGATGCTTTGGGTGACTTATTTAATACACTCAAATCTAAAGGAGATGTCTGTGCAATAGTTTACTGCCTTGAACGTTCAATGTGTGATGAATTGTCAGCTCATCTATCCCAAAGAGGCATTTCTTGTGCTGCTTATCATGCAGGATTGAATAATAAAATGCGAACTTCGGTGTTAGATGATTGGATTTCTTCTAAGATAAGAGTTGTTGTTGCCACTGTAGCTTTTGGAACTTATGATTTATTTGAGATTGTGATTATTCCTTTCTTTTCTTTCTATACTCTGCATGGAGCTGTTACTTGCATACAGTTACTGAGCCTTCGGTGTTCATTCAGAATGGGCATTGATAGAAAGGATGTCAGAATTGTGTGCCACTTCAATATTCCGAAGTCAATGGAAGCATTCTATCAAGAGTCAGGCAGAGCAGGTCGTGATCAATTACCCTCTAGAAGTCTGTTGTACTATGGGGTAGATGATCGCAAGAGGATGGAATTTATATTAAGCAACTCAGGGAACAAGAAGTCACAATTATCAAGTTCACAGGAAGAATCATCCAGAATGTCCCTGACTGCGTTCAACCAGATGGTTGAATATTGTGAAGGATCTGGATGCCGTAGGAAAAGGATTCTTGAGAGTTTTGGGGAGCAGGTAACTGCATCACTATGTGGAAAAACATGTGACGCCTGTAGACATCCAAATTTAGTTGCCAGATACTTGGAGGATCTCACAACTGTCTGTGCTCTGCGCCAGAAAAATGGTTCTTCTCGAGTTTTTATGACCAGTTCCACTGACGTAATCAATGGAGAACAGTTGTCTGAATTCTGGAATCGGGATGAGGATGCAAATGGATCAGAGGAAGATATTTCTAACTCTGATGGTGATGGTAATGATGTTGTCAACAACCTAACCCGGTCAAAGCTTCAATCCAGATTGGGAGTAAATGAAAAGCTTGCTTTGTTACAACGGGCAGAAGAAAACTTCTATCGAAATGAGAACACTGATAAACAGAGCAAGAAAGTTGACAAGAATGCTATTTCGGATATAATGCGAGGAGCAAGCAGGCAAAGATTGCAAAATGCTCTAAAACAGGCTCAGCAACGGCCTGACAACTTCAAGATTGAAGTGGAAACCTCAGCATCTTTTCTCGAAGATGAATGCTACAAGAAATATGGCAAAGCTGGAAAATCATTCTATTATTCACAAGTGGCAAGTACTGTAAGGTGGCTGACAACTACAAGCTCTATTGATCTGATGAACCGACTTTGTGCAATTAATGCCTCCACATCGACGAATGTCTTGTCTGAAGCTGAACATCCCTTAACACGGCCACCTGCTTTAGATCCTTGTGCACAAGAAGATACTGGCAATGAACTCTCAGGCGATGCTAGATCAGAAAACCCATGTGGTGTGCCAATGGAAAGCTCTTCTTTTAATACAAAGTTACCACAAATACCATCCTTCTCTGAATTCGTAAATAGCAGGAAAGCAAAAGGGGACCAACTCAATGACACGAAAAGGCATTCATCAAGAGTAGAAAAGAAGATGAGGATACAGTAG 3618 0.4176 MASDSNELASSNTLQSICYKRCSLQLLDQRKLPLETIYLNIRDSTDGWNAIRDMVVRGAPAIAIAAALSLAVEVSNLDDFNGSPSDAVSLLQKKLDYLVSSRPTAVNLSDAAAKLNEVISKASATTSEAGSVFQAYVEAAEIMLEDDVASNRAIGSYGASFIQHQTEKQKLSVLTHCNTGSLATAGYGTALGVIRALHSGGVLERAYCTETRPFNQGSRLTAYELVHEKIPATLIADSAVAALMKAGRVDAVVVGADRVASNGDTANKIGTYSVALCAKFHNVPFYVAAPLTSIDLSLSSGQEIVIEERSPKELLNSRGGLGEQVAASGISVWNPAFDVTPANLISGIITEKGVITKTSAGDAFDIKAFIQKASAHFSFLFRSFVLNSLVDEFVERPSSSQVGIKMQKKLLLPLNDTDANKKKTPLYNREALVKLLRWHFGYPDFRGMQLKAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKTGIVLVVCPLIGESCSSFSRDTAVFSDFCSDDSLNGRHLFNFIENQVMALKEKGIAAEFLSSTKTADAKNKVSDFSVLRFKIHEDLASGKPSTRLLYVTPELIATPGFMSKLTKIYSRGLLSLIAIDEAHCISSWGHDFRPSYRKLSSLRSHLPDVPILALTATAVPKVQKDVVESLHMQNPLILKSSFNRPNIYYEVRYKDLLDDALGDLFNTLKSKGDVCAIVYCLERSMCDELSAHLSQRGISCAAYHAGLNNKMRTSVLDDWISSKIRVVVATVAFGTYDLFEIVIIPFFSFYTLHGAVTCIQLLSLRCSFRMGIDRKDVRIVCHFNIPKSMEAFYQESGRAGRDQLPSRSLLYYGVDDRKRMEFILSNSGNKKSQLSSSQEESSRMSLTAFNQMVEYCEGSGCRRKRILESFGEQVTASLCGKTCDACRHPNLVARYLEDLTTVCALRQKNGSSRVFMTSSTDVINGEQLSEFWNRDEDANGSEEDISNSDGDGNDVVNNLTRSKLQSRLGVNEKLALLQRAEENFYRNENTDKQSKKVDKNAISDIMRGASRQRLQNALKQAQQRPDNFKIEVETSASFLEDECYKKYGKAGKSFYYSQVASTVRWLTTTSSIDLMNRLCAINASTSTNVLSEAEHPLTRPPALDPCAQEDTGNELSGDARSENPCGVPMESSSFNTKLPQIPSFSEFVNSRKAKGDQLNDTKRHSSRVEKKMRIQ. 1206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03872 1205 MobiDBLite consensus disorder prediction 1121 1205 - -
Seca5g03872 1205 Pfam RecQ zinc-binding 846 917 IPR032284 -
Seca5g03872 1205 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 453 666 IPR014001 -
Seca5g03872 1205 FunFam Methylthioribose-1-phosphate isomerase 169 367 - -
Seca5g03872 1205 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 453 845 IPR027417 -
Seca5g03872 1205 Gene3D - 408 673 IPR027417 -
Seca5g03872 1205 NCBIfam S-methyl-5-thioribose-1-phosphate isomerase 15 357 IPR005251 -
Seca5g03872 1205 CDD SF2_C_RecQ 674 842 - -
Seca5g03872 1205 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 690 872 IPR001650 -
Seca5g03872 1205 SMART ultradead3 441 682 IPR014001 -
Seca5g03872 1205 NCBIfam RecQ family ATP-dependent DNA helicase 522 764 IPR004589 GO:0004386|GO:0006310
Seca5g03872 1205 SMART helicmild6 717 833 IPR001650 -
Seca5g03872 1205 Hamap Putative methylthioribose-1-phosphate isomerase [mtnA]. 14 366 IPR005251 -
Seca5g03872 1205 FunFam Methylthioribose-1-phosphate isomerase 12 203 - -
Seca5g03872 1205 PANTHER METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE 11 371 - -
Seca5g03872 1205 Pfam Helicase conserved C-terminal domain 696 831 IPR001650 -
Seca5g03872 1205 Gene3D - 12 203 IPR027363 -
Seca5g03872 1205 MobiDBLite consensus disorder prediction 1156 1182 - -
Seca5g03872 1205 Gene3D - 674 934 IPR027417 -
Seca5g03872 1205 Pfam Initiation factor 2 subunit family 56 356 IPR000649 GO:0044237
Seca5g03872 1205 SUPERFAMILY NagB/RpiA/CoA transferase-like 12 359 IPR037171 -
Seca5g03872 1205 NCBIfam S-methyl-5-thioribose-1-phosphate isomerase 42 357 IPR011559 GO:0044249
Seca5g03872 1205 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 798 937 IPR027417 -
Seca5g03872 1205 Pfam DEAD/DEAH box helicase 448 492 IPR011545 GO:0003676|GO:0005524
Seca5g03872 1205 Gene3D - 204 369 IPR042529 -
Seca5g03872 1205 CDD DEXHc_RecQ 434 673 - -
Seca5g03872 1205 MobiDBLite consensus disorder prediction 1183 1205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03872 Seca-Chr5 95815233 95829251 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03872 53 378 Eukaryotic Initiation Factors Gene Family AT2G05830 76.453 1.41e-160 479
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03872 K10901 - gmx:100819601 1172.53