Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03866 ATGGATACGAAACAACAATGGATTGAGAATTTGCAAGTTAACGACGGCGCACATCGCAGAGAAATACGCCAAAAGGTTTTCCCTGAAAGAACAGCCACATACACATGCTTGAGCAGAAGAACCTTTACAAATGCAACAAAAGGAGTCTCAGATGTCTGTGAGCCACTTCCTCCAGATAGGCCTTTGTGGTTTCCTGGTAGTTCACCTCCTCCATGGCTTGATGGCAGATGGGCAATGCTAGCTGTGTCTGGAATTCTGATTCCAGAATTGCTTGAAAGGATGGGTTATGTTGAGAACTTCTCTTGGTATGATGCTGGTACTCGAGAGTACTTTGCAGATCCCACAACCTTGTTCATTGTACAATTAGCCTTGATGGGTTGGGTGGAAGGTAGAAGATGGGCTGATTTGATTAACCCAGGGAGTGTTGATATTGAGCCCAAGTTTCCAAATAGGCCCAACCCAAAGCCAGATGTTGGTTACCCAGGTGGGTTGTGGTTTGACCCCTTCATGTGGGGAAGAGGGTCACCAGAGCCAGTCATGGTGTTAAGGACCAAGGAGATCAAGAATGGTAGACTTGCAATGTTGGCTTTTGTTGGCTTCTGGTTCCAAGCTATTTATACTGGCCAAGACCCCATTGAAAATTTGATGGCACACCTTGCAGATCCTGGTCACTGCAACATTTTCTCGATAAGATATCAGATTGATATTTGGATGGAGCAGAAGAGGTTGCCCCAACTGGATATGGCCATGCACCTATTACCTGCTATATCAGCTCCAAAATTATGGGAAGGGAAAACAACAACCTCTGAGTTGCAAACTCTATTCTTAGAATCTCACGAGACCCAATCCCTTCTAAGGCTCAAACAATCCTTCACCAACGCTGACGAATCCCTAGCTTCATGGATCCCCAATGTCTCCCCTTGTTCCGGCACATGGGTCGGCGTCGTTTGCTTCAACAATGTCATCACCGGCCTCCATCTCTCCGATCTCAACCTCTCCGGCACCATCGACGTCGAAGCCCTCTCTGAGATTCAAGGCCTCAGAACCCTAAGCTTCGTTAACAACTCCTTCTCTGGCTCAATCCCTGCTTTTCACAAACTTGGCACCATCAAATCCCTCTTACTCACACAAAACCAATTCTCAGGACCCATTCCTCAAGATTTCTTCTCCCATTTAGCTTCCTTAAAGAAAATTTGGCTCTCTGGTAACAAATTCTCCGGTAACATACCCGTTTCCTTAACCGAACTTGACCTCCTCAAAGAGTTACACCTCGAGTATAATGAGTTTTCAGGTCCTGTTCCTAATCTCAAGCAAGAGTTTACATCGTTTGATGTGTCCAACAACAAATTAGAAGGTCCAATTCCAGAAAAATTGTCCAAGTTTGATGCTGTTTCGTTTTCAGGAAATGAAGGACTTTGTGGGAAACCGTTAGATAAGCCCTGTGATAGTGATAGTTCCACTTCTTTTTCTTCTAATTACTCTGTTTTTCAGAATGGGGGTGGTTATGGTTCTAGTTGGGCGGTGAAGGTGATTGTGATACTCGTTTTGGCGGTTCTTGCGGCGGTGATTTTCCTCTTTGTGAAGTCTAGGCAACGGCGTCATGATGATTTCAGCGTGGTGAGTAGGGATAGTAGTGTGGATGAGATGGTGCAAGTGCATGTGCCTAGTAGCAGGGGATCCTCTGTTTCTTCTTCGAATGCTTCTTATCAACCGGTTGGAAGAAAGGGGGGTGATTCTTCTTCTAAGAGAGGAGGGGCTACGAGGGGTGGGGTTGGGGACCTTGTGATGGTGAATGAGGAAAAGGGGGCGTTTGGTTTGCAGGATTTGATGAAGGCTGCTGCAGAGGTTCTGGGGAATGGTGCTTTGGGATCTGCTTATAAAGCTTCCATGGCGAATGGGTTGTGTGTTGTGGTGAAGAGGATGAGGGAGATGAATAAGATAGGGAGAGATGTGTTTGATGCTGATATGAGACAGTTTGGAAGGATCAGACATAGTAATGTTTTGACTCCTTTGGCTTACCATTACCGCAAGGAGGAGAAGCTTTTTATCACAGAGTACATGCCCAAAGGAAGCTTGTTATATGTCTTGCATGGTGATAGAGGAACCTTCCATTCTGAGCTGAATTGGCCTACCCGTTTGAAGATTGTTAAGGGAATGGCAAGAGGGCTGGGCTTCCTTTATACTGAGTTTTCTACCTATGACCTGCCCCATGGAAATCTTAAGTCTTGCAATGTTCTACTAACTGATGATTATGAGCCTCTATTAAGTGACTATGCTTTTCAACCACTAATCAACCCCAGTGTTGCAGTGCAGGCAATGTTTGCCTATAAAACCCCAGATTATGTACAGTGCCAGAGAGTTACACAGAAGACTGATGTTTATTGCCTTGGAATCATCATTCTTGAAATCATCACAGGGAAATTCCCATCTCAGTATCACAGCAATGGCAAAGGTGGGACTGATGTTGTGCAATGGGTGCTCACAGCAATTTCTGAGAGAAGAGAAGAAGAATTGATTGATCCAGAGTTGAAAAACAACACAAGTTCACTCAATCAGATGCTGCAAATTCTCCAAATTGGGGCCGCTTGCACAGATAGCAACCCTGACCAAAGGCTAAACATGAAGGAAGCCATTAGAAGGATAGAGGAAGTAAAGGTTTAA 2661 0.4502 MDTKQQWIENLQVNDGAHRREIRQKVFPERTATYTCLSRRTFTNATKGVSDVCEPLPPDRPLWFPGSSPPPWLDGRWAMLAVSGILIPELLERMGYVENFSWYDAGTREYFADPTTLFIVQLALMGWVEGRRWADLINPGSVDIEPKFPNRPNPKPDVGYPGGLWFDPFMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFWFQAIYTGQDPIENLMAHLADPGHCNIFSIRYQIDIWMEQKRLPQLDMAMHLLPAISAPKLWEGKTTTSELQTLFLESHETQSLLRLKQSFTNADESLASWIPNVSPCSGTWVGVVCFNNVITGLHLSDLNLSGTIDVEALSEIQGLRTLSFVNNSFSGSIPAFHKLGTIKSLLLTQNQFSGPIPQDFFSHLASLKKIWLSGNKFSGNIPVSLTELDLLKELHLEYNEFSGPVPNLKQEFTSFDVSNNKLEGPIPEKLSKFDAVSFSGNEGLCGKPLDKPCDSDSSTSFSSNYSVFQNGGGYGSSWAVKVIVILVLAVLAAVIFLFVKSRQRRHDDFSVVSRDSSVDEMVQVHVPSSRGSSVSSSNASYQPVGRKGGDSSSKRGGATRGGVGDLVMVNEEKGAFGLQDLMKAAAEVLGNGALGSAYKASMANGLCVVVKRMREMNKIGRDVFDADMRQFGRIRHSNVLTPLAYHYRKEEKLFITEYMPKGSLLYVLHGDRGTFHSELNWPTRLKIVKGMARGLGFLYTEFSTYDLPHGNLKSCNVLLTDDYEPLLSDYAFQPLINPSVAVQAMFAYKTPDYVQCQRVTQKTDVYCLGIIILEIITGKFPSQYHSNGKGGTDVVQWVLTAISERREEELIDPELKNNTSSLNQMLQILQIGAACTDSNPDQRLNMKEAIRRIEEVKV. 887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03866 886 Pfam Chlorophyll A-B binding protein 74 204 IPR022796 -
Seca5g03866 886 Gene3D Ribonuclease Inhibitor 277 439 IPR032675 -
Seca5g03866 886 Gene3D Phosphorylase Kinase; domain 1 588 686 - -
Seca5g03866 886 MobiDBLite consensus disorder prediction 553 575 - -
Seca5g03866 886 Pfam Leucine rich repeat N-terminal domain 279 317 IPR013210 -
Seca5g03866 886 MobiDBLite consensus disorder prediction 553 587 - -
Seca5g03866 886 Gene3D Transferase(Phosphotransferase) domain 1 687 886 - -
Seca5g03866 886 ProSiteProfiles Protein kinase domain profile. 611 884 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g03866 886 FunFam Nuclear pore complex protein NUP107 277 435 - -
Seca5g03866 886 Gene3D Ribonuclease Inhibitor 441 481 IPR032675 -
Seca5g03866 886 SUPERFAMILY Chlorophyll a-b binding protein 59 233 - -
Seca5g03866 886 SUPERFAMILY L domain-like 283 476 - -
Seca5g03866 886 SUPERFAMILY Protein kinase-like (PK-like) 615 881 IPR011009 -
Seca5g03866 886 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 273 885 IPR046959 -
Seca5g03866 886 Pfam Protein kinase domain 615 879 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g03866 886 Gene3D Chlorophyll a/b binding protein domain 73 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03866 Seca-Chr5 95741174 95748299 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03866 280 886 Receptor kinase-like Gene Family AT3G42880 50.722 0.0 630
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Seca5g03866 Pkinase 1.7e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03866 - - gmx:100790660 813.142