Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03864 ATGTCGAGCTCATCGGAATACTCGGAGTTTTCCGGCCAGAAACCGGCGAGGGCGCCGGAAAAGTCAACTTTCTCTCAGACTTGTAGTCTATTGAGTCAATATATCAAGGAGAAGGGTAGCTTCGGAGATCTTACCCTCGGGATCACTTGCAACACCGAACCAAGTGGGTCACCTGAGACTTCTTGTCAGTCTGCAACAACCATGAACTTGTTTCCTACCAAGGAAAACAACATCACACCAAAGAACCTGACAGCTATGGATTTGCTCTCTCCACAAGCTGCCTATCATCCCCATTTAGAAGAGATTCCAACCTTGATCAATTCCAATGCAATTAAGTCTGTGAGCAAGGGACATAAAGCTGCACAGATGACAATCTTTTATGCTGGCCAAGTTATTGTGTTTGATGATTTTCCTGCTGATAAAGCGAATGAGATCATGTCCCTTGCCAGCAAGGGCACCTCCCAGAGCCAGAACAACTCTGTTTTCACTTACACACAGAGTCAGCCTTCTTTTCCTCCTAATCTAGTCAGAACATCTGCTGATTCAAGGCCAAGTACTCCAATTATTCCTCCCAGTGTGAATGTCATCCCTAGCACTGGCACCAACTCGATTCATGAACACACTCAAGTGTCATCCAGACCTATTGTTTGTGGTAAATTCTTGAGATCACTAGCACTAACTCTTGAGATGACTGATTTTGTTCCAGGATCAAATTTTTCTGACCATGAATTTCCTTTCTGTACAGATCTGCCAATTGCTAGGAAAGCTTCACTTCATCGGTTCCTTGAGAAGAGAAAGGATAGGTATGCACTCTCACCCAAATCAATAAAAATTCTGAAAATGAATTATTGCTTGGTGCCTCATGTTTGTGTATATGTGCTAGCCCTGCACCTGTTTTAA 900 0.4356 MSSSSEYSEFSGQKPARAPEKSTFSQTCSLLSQYIKEKGSFGDLTLGITCNTEPSGSPETSCQSATTMNLFPTKENNITPKNLTAMDLLSPQAAYHPHLEEIPTLINSNAIKSVSKGHKAAQMTIFYAGQVIVFDDFPADKANEIMSLASKGTSQSQNNSVFTYTQSQPSFPPNLVRTSADSRPSTPIIPPSVNVIPSTGTNSIHEHTQVSSRPIVCGKFLRSLALTLEMTDFVPGSNFSDHEFPFCTDLPIARKASLHRFLEKRKDRYALSPKSIKILKMNYCLVPHVCVYVLALHLF. 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03864 299 Pfam Jas motif 251 270 IPR018467 -
Seca5g03864 299 Pfam tify domain 119 150 IPR010399 -
Seca5g03864 299 MobiDBLite consensus disorder prediction 1 22 - -
Seca5g03864 299 ProSiteProfiles Tify domain profile. 116 151 IPR010399 -
Seca5g03864 299 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 17 273 IPR040390 -
Seca5g03864 299 SMART tify_2 116 151 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03864 Seca-Chr5 95701629 95704460 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03864 1 268 Tify Gene Family AT1G19180 36.996 1.66e-41 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Seca5g03864 tify 5.3e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03864 K13464 - gmx:100801449 337.421