Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03862 ATGGGTTTGCTTCCATTTTCAATGGTTCTATTTCTCTATTTGACCATTGTTCATTCTGTAGTTTATGGGAAGGAAAACGATACCCTATTGAATGAAAAAAAATCACTTCTTTCATTCATGTCAGGCATTGTTTCTGACCCCAAAAACGTTCTAGAGAGTTGGAAGTCACCTGGTGTTCATGTTTGCAATTGGTATGGTGTCAGATGCAATAACACAATTGATAGGATCATAGAGCTTGATCTTAATGGAAGCTTACTTGGGGGCACCATTTCCCCTGCTCTTGCCAACCTCTCTTTTTTGGAAATTCTTGATCTTTCTCAGAATTTCTTTGTGGGTCACATTCCAAAAGAACTGGGCTATTTAATTCACCTTAGACAACTCAGTTTATCTTGGAATTTTCTTGAAGGGAAAATTCCCTCTGAGTTGGGGTCACTTCATAATTTGTACTACCTTAACATGGGAAGTAATCAACTGGAAGGTGATATTCCACCATCACTTTTCTGCAATGGGTCTTCCTCATTGAGGTATATAGACCTCTCTAACAATTCCTTGGGGGGACAAATACCCTTGAACAATGAGTGTATCCTCAAAGAGCTTAGGTTCCTCTTACTTTGGTCTAACAAGCTTGTAGGCCAAGTTCCCTTAGCTCTTTCAAACTCCACACAACTTAAATGGCTTGATTTAGAGTCAAATATGTTGAGTGGGGTGCTACCATCTGAGGCTGTAAGTAATTGGCCACAATTACAATTCCTTTACCTATCAAATAATGACTTTGTTAGCCATGATGGTAACACCAACCTTGAACCTTTCTTTTCTTCCTTGATGAATTTGTCTAACATTCAAGTACTTGAGTTGGCGGGAAACAATCTTGGAGGGAAGCTACCTCATACCATTGGTGATCTTCCTACCAGCTTGTTGCAGCTTCACCTAGATGACAACCTCATATATGGTTCTATACCTCCAAACATTGGCAACCTTTTCAATCTGACTCTCCTAAACTTTTCTAGTAACTTACTAAATGGATCAATACCTCCAAGCCTCTGCCAGATGAGTAGGCTAGAGAGGATTTATTTGTCAAATAATTCACTATCTGGGGAGATTCCTTCAACCCTTGGTGGCATTAAGCATCTGGGACTTCTTGACTTGTCAAGAAACAAGCTTTCTGGTTTAATACCAGACAGTTTTGCTAACCTCTCCCAATTAAGAAAGCTTTTACTTTATGACAACCAGCTTTCTGGAACCATCCCTCCAAGTCTTGGAAAATGTGTCAATTTGGAGATTTTGGACCTATCCCACAACAAGATTTCAGGGATGATCCCTAAACAAGTTGCAGCCTTGGCTAGCCTCAAACTGTACTTGAATTTATCAAGCAATAACTTATATGGGCCTTTACCATTAGAGCTCTCCAAAATGGACATGGTGCTAGCTATTGATCTATCCATGAACAATCTCTCTGGCAGAATCCCACCACAGCTTGAAAGTTGCATAGCTCTAGAGTACCTTAACCTTTCTGGTAACTCCTTAGAAGGCCCTCTCCCAGATTCATTAGGCCAATTGCCTTATATTCAAGCACTTGATGTGTCTTCAAATCAATTGACTGGGGTAATACCACAGTCCCTTCAGTTGTCCTCCACACTCAACAAACTTAATTTCTCTTACAATAAATTCTCAGGGAGTGTCTCAAGCAAGGGGAGTTTTTCCTCTTTGACCATAGATTCTTTCCTAGGGAATGATGGTCTCTGTGGCTCAGTAAAAGGCATGCAAAGCTGCCACAAGAAACACAGATATCATTTGGTTCTCTTGTTAATTCCAATGCTACTATTTGCCACACCCCTGCTGTGCATGTTTGGGTACCCCACAAAAATTAAGTCAAAATTCAAAAAACAATTGGCAATAGTTAGCAGAAGGGAAGTGGAGGATGAAGATGAGGAAACACAAGAGCTCAAGTACCCAAGAATTTCATATAGAAAACTCATTGTAGCCACTGGAGGATTCAGTGCTTCAAGCCTAATTGGTTCAGGTCGGTTTGGACAGGTCTACAAAGGAGTTCTCCAAGATAATACAAGAATAGCTGTGAAGGTATTAAACACAACAACAGCTGGAGAGATTTCAGGAAGCTTTAAAAGGGAATGCCAAATCCTGAAAAGGACTAGGCACAGAAATTTAATAAGGATAATCACAATTTGCAGCAAAAAAGAGTTCAAGGCTCTTGTTCTTCCACTGATGCCAAATGGTAGCCTTGAGAGGCACTTATATCCAAGCCATGGGTTAAGCCAGAGGCTGCATATGGTTCAGTTAGTGAGGATCTGCAGTGATGTGGCTGAGGGAATGGCTTATCTACACCACTATTCTCCAGTTAGAGTAGTGCACTGTGATCTTAAGCCAAGCAATATACTACTTGATGATGATTTTACAGCTTTGGTAACTGATTTTGGTATTGCAAGGCTTATCAAAGGTGATGAGAACATACCCTCTAGTGACTCAACAACATCTTTCAGCTCAACACATGGTCTATTATGTGGCTCTCTTGGCTACATAGCCCCTGAGTATGGAATGGGAAAACATGCTTCAACTCAGGGTGATGTTTACAGTTTTGGAGTACTTGTTCTAGAAATAGTGACGGGTAGACGCCCAACAGATGTCCTTATCCATGAAGGCTCTAGCTTGCATGAATGGGTTAAGAGACAATATCCACACAAGCTTGATAACATTGTTGAACAAGCATTGCAAAGGTGCTTTCCTTCTGCCATGTCAAGTCACTACCACAAAATTGGGCAAGATGTTATATTGGAACTCATTGAGTTGGGGCTTCTGTGCACACACCAGAACCCTTCAACAAGACCAAGCATGCTGGATGTGGCCCAAGAAATAGGGAGGTTGAAGGACTACCTCTCTAATAAATCTTCTCTGATTCAAGAAGTCAATGCTATGGTTAATTCTTTCCCCAGTGAAGATAAATTTAGTTGGAAAATAAATAATTAA 2982 0.4054 MGLLPFSMVLFLYLTIVHSVVYGKENDTLLNEKKSLLSFMSGIVSDPKNVLESWKSPGVHVCNWYGVRCNNTIDRIIELDLNGSLLGGTISPALANLSFLEILDLSQNFFVGHIPKELGYLIHLRQLSLSWNFLEGKIPSELGSLHNLYYLNMGSNQLEGDIPPSLFCNGSSSLRYIDLSNNSLGGQIPLNNECILKELRFLLLWSNKLVGQVPLALSNSTQLKWLDLESNMLSGVLPSEAVSNWPQLQFLYLSNNDFVSHDGNTNLEPFFSSLMNLSNIQVLELAGNNLGGKLPHTIGDLPTSLLQLHLDDNLIYGSIPPNIGNLFNLTLLNFSSNLLNGSIPPSLCQMSRLERIYLSNNSLSGEIPSTLGGIKHLGLLDLSRNKLSGLIPDSFANLSQLRKLLLYDNQLSGTIPPSLGKCVNLEILDLSHNKISGMIPKQVAALASLKLYLNLSSNNLYGPLPLELSKMDMVLAIDLSMNNLSGRIPPQLESCIALEYLNLSGNSLEGPLPDSLGQLPYIQALDVSSNQLTGVIPQSLQLSSTLNKLNFSYNKFSGSVSSKGSFSSLTIDSFLGNDGLCGSVKGMQSCHKKHRYHLVLLLIPMLLFATPLLCMFGYPTKIKSKFKKQLAIVSRREVEDEDEETQELKYPRISYRKLIVATGGFSASSLIGSGRFGQVYKGVLQDNTRIAVKVLNTTTAGEISGSFKRECQILKRTRHRNLIRIITICSKKEFKALVLPLMPNGSLERHLYPSHGLSQRLHMVQLVRICSDVAEGMAYLHHYSPVRVVHCDLKPSNILLDDDFTALVTDFGIARLIKGDENIPSSDSTTSFSSTHGLLCGSLGYIAPEYGMGKHASTQGDVYSFGVLVLEIVTGRRPTDVLIHEGSSLHEWVKRQYPHKLDNIVEQALQRCFPSAMSSHYHKIGQDVILELIELGLLCTHQNPSTRPSMLDVAQEIGRLKDYLSNKSSLIQEVNAMVNSFPSEDKFSWKINN. 994
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03862 993 ProSiteProfiles Leucine-rich repeat profile. 424 445 IPR001611 GO:0005515
Seca5g03862 993 Pfam Leucine rich repeat 198 258 IPR001611 GO:0005515
Seca5g03862 993 Pfam Leucine rich repeat 351 411 IPR001611 GO:0005515
Seca5g03862 993 SMART LRR_typ_2 374 397 IPR003591 -
Seca5g03862 993 SMART LRR_typ_2 97 121 IPR003591 -
Seca5g03862 993 SMART LRR_typ_2 326 350 IPR003591 -
Seca5g03862 993 SMART LRR_typ_2 398 422 IPR003591 -
Seca5g03862 993 SMART LRR_typ_2 519 542 IPR003591 -
Seca5g03862 993 SMART LRR_typ_2 423 446 IPR003591 -
Seca5g03862 993 SMART LRR_typ_2 145 169 IPR003591 -
Seca5g03862 993 SMART LRR_typ_2 277 301 IPR003591 -
Seca5g03862 993 Gene3D Phosphorylase Kinase; domain 1 625 740 - -
Seca5g03862 993 SUPERFAMILY Protein kinase-like (PK-like) 645 955 IPR011009 -
Seca5g03862 993 PANTHER RECEPTOR-LIKE PROTEIN 55 308 958 - -
Seca5g03862 993 Gene3D Ribonuclease Inhibitor 196 593 IPR032675 -
Seca5g03862 993 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 742 969 - -
Seca5g03862 993 PRINTS Leucine-rich repeat signature 377 390 - -
Seca5g03862 993 PRINTS Leucine-rich repeat signature 422 435 - -
Seca5g03862 993 Pfam Leucine Rich Repeat 123 145 IPR001611 GO:0005515
Seca5g03862 993 Pfam Leucine Rich Repeat 498 518 IPR001611 GO:0005515
Seca5g03862 993 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
Seca5g03862 993 SUPERFAMILY L domain-like 33 261 - -
Seca5g03862 993 FunFam Leucine-rich repeat receptor-like protein kinase 30 190 - -
Seca5g03862 993 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 368 594 - -
Seca5g03862 993 ProSiteProfiles Protein kinase domain profile. 665 964 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g03862 993 FunFam Leucine-rich repeat receptor protein kinase EMS1 270 367 - -
Seca5g03862 993 ProSitePatterns Protein kinases ATP-binding region signature. 671 693 IPR017441 GO:0005524
Seca5g03862 993 ProSitePatterns Serine/Threonine protein kinases active-site signature. 788 800 IPR008271 GO:0004672|GO:0006468
Seca5g03862 993 CDD STKc_IRAK 671 960 - -
Seca5g03862 993 SUPERFAMILY L domain-like 327 582 - -
Seca5g03862 993 Gene3D Ribonuclease Inhibitor 29 195 IPR032675 -
Seca5g03862 993 Pfam Protein kinase domain 667 955 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g03862 993 SMART serkin_6 665 964 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g03862 993 Gene3D Transferase(Phosphotransferase) domain 1 742 981 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03862 Seca-Chr5 95664849 95668059 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03862 32 962 Receptor kinase-like Gene Family AT3G47570 35.569 1.63e-166 513
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Seca5g03862 Pkinase 5.8e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03862 - - gmx:100792446 1407.89