Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03860 ATGGTGAAGCAGTGTGTGGAAAAACCTGCGGAAGAGCGAAGTGATTCCTTGTACCGTGGAGTACGGAAGAGGAAGTGGGGAAAATTTGTCTCTGAAATCAGATTACCCAACAGCCGCCAGAGGATATGGTTAGGTTCCTACGACACCGCCGAAAAGGCAGCGCGTGCCTTCGATGCTGCCATGTTCTGCTTACGTGGCACTGCCGGAAGGTTTAACTTCCCCGGTGACCTTCCTGACATCACTGACGGAAGATCCATGACCCACTCTCAAATTCAGACCGCTGCTGCCCGTTTTGCCCATACGGAGCCCCGAAAGGATTACCCGGGTCAACCCGTTACAATTCCGCAGGAATCTTTCTCTTCGTCAGAGGGGACGATTTCACTGCCTATGGAGTCGCCGTCTCCCCCTCTCTCTGAGGTTACGGTTCAGACAGATTATGACGTCACGCCAAGCGAGTCGCTTTCGGATCTGTTTTCGGTTATTGGGTCGGGTAATTTTGAACCCGATTACTCTGTTTTTCCGAGTTTCGATGATTTTGGCAGCGATTTCTACGTGCCGGAGCTGCCAAGCTTTGATTATGGAGCAGAGAACATGGATGGGTTGATAATTGAGGACTCGTTCTTGTGGAATTTCTAA 636 0.5079 MVKQCVEKPAEERSDSLYRGVRKRKWGKFVSEIRLPNSRQRIWLGSYDTAEKAARAFDAAMFCLRGTAGRFNFPGDLPDITDGRSMTHSQIQTAAARFAHTEPRKDYPGQPVTIPQESFSSSEGTISLPMESPSPPLSEVTVQTDYDVTPSESLSDLFSVIGSGNFEPDYSVFPSFDDFGSDFYVPELPSFDYGAENMDGLIIEDSFLWNF. 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03860 211 CDD AP2 16 74 IPR001471 GO:0003700|GO:0006355
Seca5g03860 211 SMART rav1_2 17 80 IPR001471 GO:0003700|GO:0006355
Seca5g03860 211 SUPERFAMILY DNA-binding domain 16 75 IPR016177 GO:0003677
Seca5g03860 211 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 12 129 - -
Seca5g03860 211 MobiDBLite consensus disorder prediction 107 138 - -
Seca5g03860 211 FunFam Ethylene-responsive transcription factor 2 16 75 - -
Seca5g03860 211 PRINTS Ethylene responsive element binding protein signature 40 56 IPR001471 GO:0003700|GO:0006355
Seca5g03860 211 PRINTS Ethylene responsive element binding protein signature 18 29 IPR001471 GO:0003700|GO:0006355
Seca5g03860 211 Pfam AP2 domain 17 66 IPR001471 GO:0003700|GO:0006355
Seca5g03860 211 MobiDBLite consensus disorder prediction 113 138 - -
Seca5g03860 211 Gene3D AP2/ERF domain 17 75 IPR036955 GO:0003700|GO:0006355
Seca5g03860 211 ProSiteProfiles AP2/ERF domain profile. 17 74 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03860 Seca-Chr5 95647026 95647661 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03860 16 211 AP2-EREBP Transcription Factor Family AT1G19210 46.766 3.49e-49 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca5g03860 AP2 1.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03860 - - gmx:100813688 267.314