Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03858 ATGTATCTGAGTTGTTGTTTTACCATGCAGTACACCGCTATTAAGCCTCTGGGTGACAGGGTACTGGTTAAAGTTAAGGAAGCAGAAGAGAAGACCGAGGGTGGGATTTTGCTTCCCACAACTGCTCAAACAAAGCCTCAAGGGGGTGAGGTCGTTGCTGTTGGAGAAGGAAAGACAGTTGGGAAGAGTAACGTGGAAATTAGTGTGAAGACGGGCGCACAAGTTGTGTATTCCAAGTATGCAGGTACTGAGGTGGACTTCAATGGTACAAAGCATCTTATTCTGAAGGATGATGACATTGTTGGTATCCTTGAAACTGATGACATCAAGGATCTTAAACCCTTGAATGATAGAGTCCTCATAAAGGTTGCAGAAGCTGAAGAAAAAACTGCAGGCGGTTTGTTGCTTACAGAGGCAACCAAAGAGAAACCTTCGATTGGAACAGTGATAGCAGTTGGTCCTGGGCATCTGGATGAGGAAGGCAATAGAAAACCTTTGACCGTTGCTGCTGGGAACACTGTTTTGTACTCCAAATACGCTGGGAATGACTTCAAGGGCAAAGATGGTTCTGACTACATTACCTTGAGGAGCTCAGATGTCATGGCTGTCCTCTCCTAG 618 0.4547 MYLSCCFTMQYTAIKPLGDRVLVKVKEAEEKTEGGILLPTTAQTKPQGGEVVAVGEGKTVGKSNVEISVKTGAQVVYSKYAGTEVDFNGTKHLILKDDDIVGILETDDIKDLKPLNDRVLIKVAEAEEKTAGGLLLTEATKEKPSIGTVIAVGPGHLDEEGNRKPLTVAAGNTVLYSKYAGNDFKGKDGSDYITLRSSDVMAVLS. 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03858 205 Coils Coil 202 205 - -
Seca5g03858 205 ProSitePatterns Chaperonins cpn10 signature. 14 38 IPR018369 GO:0005524|GO:0006457
Seca5g03858 205 SUPERFAMILY GroES-like 12 105 IPR011032 -
Seca5g03858 205 CDD cpn10 14 104 IPR020818 GO:0005524|GO:0006457|GO:0044183
Seca5g03858 205 Pfam Chaperonin 10 Kd subunit 14 103 IPR020818 GO:0005524|GO:0006457|GO:0044183
Seca5g03858 205 Pfam Chaperonin 10 Kd subunit 112 203 IPR020818 GO:0005524|GO:0006457|GO:0044183
Seca5g03858 205 ProSitePatterns Chaperonins cpn10 signature. 112 136 IPR018369 GO:0005524|GO:0006457
Seca5g03858 205 FunFam 10 kDa chaperonin 110 205 - -
Seca5g03858 205 Hamap Co-chaperonin GroES [groES]. 13 105 IPR020818 GO:0005524|GO:0006457|GO:0044183
Seca5g03858 205 SUPERFAMILY GroES-like 111 204 IPR011032 -
Seca5g03858 205 Gene3D GroES chaperonin 107 205 IPR037124 GO:0006457
Seca5g03858 205 Gene3D GroES chaperonin 8 106 IPR037124 GO:0006457
Seca5g03858 205 FunFam 20 kDa chaperonin, chloroplastic 7 106 - -
Seca5g03858 205 PRINTS 10kDa chaperonin signature 14 29 IPR020818 GO:0005524|GO:0006457|GO:0044183
Seca5g03858 205 PRINTS 10kDa chaperonin signature 70 82 IPR020818 GO:0005524|GO:0006457|GO:0044183
Seca5g03858 205 PRINTS 10kDa chaperonin signature 91 104 IPR020818 GO:0005524|GO:0006457|GO:0044183
Seca5g03858 205 PRINTS 10kDa chaperonin signature 36 57 IPR020818 GO:0005524|GO:0006457|GO:0044183
Seca5g03858 205 PIRSF Cpn21 3 205 IPR017416 GO:0006457|GO:0046914|GO:1901671
Seca5g03858 205 PANTHER 10 KDA HEAT SHOCK PROTEIN 110 203 IPR020818 GO:0005524|GO:0006457|GO:0044183
Seca5g03858 205 CDD cpn10 112 204 IPR020818 GO:0005524|GO:0006457|GO:0044183
Seca5g03858 205 Hamap Co-chaperonin GroES [groES]. 111 205 IPR020818 GO:0005524|GO:0006457|GO:0044183
Seca5g03858 205 SMART Cpn10_2 111 204 IPR020818 GO:0005524|GO:0006457|GO:0044183
Seca5g03858 205 SMART Cpn10_2 13 104 IPR020818 GO:0005524|GO:0006457|GO:0044183
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03858 Seca-Chr5 95617102 95619230 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03858 10 205 Calmodulin-binding Proteins AT5G20720 82.143 4.00e-117 331
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03858 K04078 - gmx:100814751 367.081