Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03857 ATGAAGGCTCCTTCCAATGGTTACTTGCCTAATTCTGGCGAAGGGGAAAGGAAGACCATCAATTCAGAGTTATGGCATGCTTGTGCTGGACCGTTGGTTTCATTACCTCCTGTTGGAAGTCTTGTGGTTTACTTCCCTCAAGGACACAGTGAACAAGTTGCAGCATCCATGCAAAAGGAGGCTGACTTCATACCGAGTTATCCTAACCTTCCATCCAAGTTGATTTGCATTCTTCACAATGTTGCCCTGCATGTAGGTGCACCTCCCTCATGTGCATGGCTGGCTGATCCTGAAACTGATGAGGTTTATGCACAGATGACCCTTCAGCCAGTAAATAAATATGACAAGGAAGCAATGATGGCATCAGACATGAGTCTCAAACAAAGCCAACAACCTACCGAATTCTTTTGCAAAACTCTTACAGCTAGTGATACAAGCACTCATGGTGGATTTTCTGTACCTCGTAGAGCAGCTGAGAAAATATTCCCCCCTCTGGATTTTTCCATGCAACCTCCAGCTCAGGAGATTGTTGCCAAAGATTTGCATGACACCACATGGACATTTAGGCATATTTATCGCGGACAACCAAAGAGGCATCTATTGACTACTGGTTGGAGTGTCTTTGTTAGCACAAAAAGGCTATTTGCTGGAGATTCAGTTCTTTTCATCAGAGATGAAAAACAGCAACTTCTTTTAGGTATAAAGAGAGCTAACAGACAGCAGCCAGCACTATCTTCATCAGTAATATCCAGTGACAGCATGCATATTGGCATTCTTGCTGCTGCAGCTCATGCTGCTTCAAATAACAGCCCGTTCACTATATTTTATAATCCAAGGGCCAGCCCCTCTGAATTTGTAATTCCAATTGCCAAGTATAATAAATCCTTGTTCACTCAAGTATCACTTGGAATGAGATTCAGAATGATGTTTGAGACTGAGGAGTCAGGTGTACGCAGATATATGGGTACAATCACTGGGATCAATGACTTGGATCCTGTCAGATGGAAAAATTCACAATGGCGCAATCTTCAGGTTGGATGGGATGAATCAACTGCTGGTGAGCGCCCAAGCAGAGTTTCAATTTGGGATATTGAGCCAGTAGTGACTCCTTTCTACATTTGTCCACCTCCATTTTTTAGGCCCAAGTTCCCCAAGCAACCAGGAATGCCAGAAGATGAGTCTGATATAGAAAATGCTTTCAAGAGAGCCATGCCTTGGCTTGGAGATGACCTTGGAATGAAGGATGCCTCAAATTCAATCTTTCCTGGTTTGAGTTTAGTGCAATGGATGAGCATGCAGCAGAATAATCAGTTCTCTGCTGCACAATCAGGGTTTCTGCCTCCATCCATGCTTTCATCTAATACACTGCATGGTAATCTTAACACTGATGATCCATCCAAGTTATTGAGCTTTCAAAACCCCGTCCTCTCTGCACCAAGTCTTCAATTTAACAAACCTAATTTACCAAACCAAGTCAATCAATTGCAACAGCCCCCAACGTCGTGGCCTCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGAAGCTGCAGTCATTATTGCAAACACCATTAAACCAGCTCCAGCAGCAGCAGCAGCAGCAAAGGCAACAACAACTGCCTGGACCACAAAACCTGCCACAGCCACAGCAACAACAACCCCAACTTCCTCAGCAGAGAGCACAGCAGCCACAACAACAGCAACAGTCTAATCAACACACCATTATGAATAATGGGACAGTTGCTTCTAGCCAGATTCCAAATCAGTGTGTACAGCAACCGGTATCCTATTCTCAGCTTCAGCAACAGCAATTACTCTCAGGAAGTATCTCACCCCAACAAAGTTTCCAATCGGCTGGTAAGAATACAATGCTAATGACATCCTTACCACAAGACTCACAATTTCAGCAACAGATAGACCAGCAAGCTACTCTCTTACAGAGGCAGCAGCAGCAACAGACACAGTTGCAACAATCTCCATTGCAGTTATTGCAACAAAGCCTGTCACAAAGGGCATCACAGCAACCACAAATGACTCAAATGTCACCGCAAAACAGCTCAGAGCAGCAACCACAGTTACAGTTGTTACAGAAATTGCAACAGCAGCAGCAGCAACTCCTGTCCACATCTAGCTCAAATTTGCAGTCTCAGCTTCTGCAGCAACAAAATTCTCACCAACAAAACCAGCAACTGCCGCAGCTGCCTCTATCTCAGCATCAGCCTCAACAGCTTGGCAACAATGCATTCTCAATGGACAGGCTTCTCAACAACAACTTCTCTTCTTCAGCTCTGATGCAATCACAGCAGCTTCCTGTAAGCCAACCGCAGCATACACAGAAATCACCAACTTATACTAGAGCTCCCTCTACTCTTACAGATGCAGATGCCCCATCATGCTCAACTTCTCCATCTACTAATAACTGCCAGATGTCTCCTCCAAACCTCCTGAAAAGAAATCAACAAGTAACAGTCACATTAGGGGGGACTTCGGTAGTTGAACCAACCAATAATCTAATACAGGAGCTTCAGACTAAGTCTGACATGCATATCAAACATGAATTAGCCAGTGTAAAAGGACCTGACAAGCTAAAGTATAAAGGGACAATTACTGATCAGCTGGAAGTTTCTTCTGGAACACCTTACTGTATTGATCCTGGTAATATCCACCAGAACTTCCCACTTCCCAGCTTCTGCATGGATGCGGATGTCCAATCACATGCAAGAAATAATCTACCATTTGCCTCTAATCTCGATGGATTAACACCTGATACTTTGCTCTCAAGGGGGTATGACTCTCAAAAAGATCTTCAAAACTTGCTGTCTAATTATGGTGGTGGTCCAAGAGACATTGAAACTGAGCTGTCCACTGCTGCCATTAGTCCACAGTCATTTGGTGTGCCAAACATGCCTTTTAAACCAGGATGCTCAAGTGATATTGCCATCAATGATACTGGGGTTTTGAATAATGGCTTGTGGGCTAATCAAACTCAACGAATGCGAACATATACTAAGGTTCAAAAATGTGGCTCTGTTGGAAGATGTATTGATGTCACCCGATACAAGGGATATGATGAACTTCGGCATGATTTGGCTCGTATGTTTGGGATTGAAGGGCAGCTAGAAGATCCTCTAAGGACTGAGTGGAAACTAGTATATGTGGATCATGAAAATGACATTCTTCTTGTTGGTGATGACCCTTGGGAAGAATTTGTAAGCTGTGTCCAGAGCATAAAGATATTGTCATCTGCTGAGGTACAACAAATGAGCTTGGATGGGGATTTAGGTCATGTTCCAATCCCCAATCAAGCTTGTAGTGGGACAGAAAATGGCAATGCATGGAGAGGACAGTATGATGATAACTCTGCAGCCTCATTCAATAGATAA 3381 0.4392 MKAPSNGYLPNSGEGERKTINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKEADFIPSYPNLPSKLICILHNVALHVGAPPSCAWLADPETDEVYAQMTLQPVNKYDKEAMMASDMSLKQSQQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQEIVAKDLHDTTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKQQLLLGIKRANRQQPALSSSVISSDSMHIGILAAAAHAASNNSPFTIFYNPRASPSEFVIPIAKYNKSLFTQVSLGMRFRMMFETEESGVRRYMGTITGINDLDPVRWKNSQWRNLQVGWDESTAGERPSRVSIWDIEPVVTPFYICPPPFFRPKFPKQPGMPEDESDIENAFKRAMPWLGDDLGMKDASNSIFPGLSLVQWMSMQQNNQFSAAQSGFLPPSMLSSNTLHGNLNTDDPSKLLSFQNPVLSAPSLQFNKPNLPNQVNQLQQPPTSWPQQQQQQQQQQQKLQSLLQTPLNQLQQQQQQQRQQQLPGPQNLPQPQQQQPQLPQQRAQQPQQQQQSNQHTIMNNGTVASSQIPNQCVQQPVSYSQLQQQQLLSGSISPQQSFQSAGKNTMLMTSLPQDSQFQQQIDQQATLLQRQQQQQTQLQQSPLQLLQQSLSQRASQQPQMTQMSPQNSSEQQPQLQLLQKLQQQQQQLLSTSSSNLQSQLLQQQNSHQQNQQLPQLPLSQHQPQQLGNNAFSMDRLLNNNFSSSALMQSQQLPVSQPQHTQKSPTYTRAPSTLTDADAPSCSTSPSTNNCQMSPPNLLKRNQQVTVTLGGTSVVEPTNNLIQELQTKSDMHIKHELASVKGPDKLKYKGTITDQLEVSSGTPYCIDPGNIHQNFPLPSFCMDADVQSHARNNLPFASNLDGLTPDTLLSRGYDSQKDLQNLLSNYGGGPRDIETELSTAAISPQSFGVPNMPFKPGCSSDIAINDTGVLNNGLWANQTQRMRTYTKVQKCGSVGRCIDVTRYKGYDELRHDLARMFGIEGQLEDPLRTEWKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSSAEVQQMSLDGDLGHVPIPNQACSGTENGNAWRGQYDDNSAASFNR. 1127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03857 1126 CDD B3_DNA 135 227 IPR003340 GO:0003677
Seca5g03857 1126 SMART B3_2 136 238 IPR003340 GO:0003677
Seca5g03857 1126 FunFam Auxin response factor 134 238 - -
Seca5g03857 1126 SUPERFAMILY CAD & PB1 domains 1013 1077 - -
Seca5g03857 1126 FunFam Auxin response factor 299 371 - -
Seca5g03857 1126 FunFam Auxin response factor 994 1088 - -
Seca5g03857 1126 Gene3D - 299 370 - -
Seca5g03857 1126 MobiDBLite consensus disorder prediction 1106 1126 - -
Seca5g03857 1126 MobiDBLite consensus disorder prediction 480 571 - -
Seca5g03857 1126 Pfam Auxin response factor 262 344 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Seca5g03857 1126 SUPERFAMILY DNA-binding pseudobarrel domain 125 265 IPR015300 -
Seca5g03857 1126 Gene3D - 994 1088 - -
Seca5g03857 1126 Pfam B3 DNA binding domain 136 237 IPR003340 GO:0003677
Seca5g03857 1126 Gene3D - 133 237 IPR015300 -
Seca5g03857 1126 ProSiteProfiles PB1 domain profile. 999 1092 IPR000270 GO:0005515
Seca5g03857 1126 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 680 IPR044835 GO:0003677|GO:0006355|GO:0009725
Seca5g03857 1126 MobiDBLite consensus disorder prediction 764 813 - -
Seca5g03857 1126 Pfam AUX/IAA family 996 1085 IPR033389 -
Seca5g03857 1126 MobiDBLite consensus disorder prediction 665 694 - -
Seca5g03857 1126 ProSiteProfiles B3 DNA-binding domain profile. 136 238 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03857 Seca-Chr5 95603522 95610420 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03857 1 497 B3 DNA Binding Superfamily AT1G19220 80.684 0.0 825
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Seca5g03857 AUX_IAA 4e-09 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03857 K14486 - gmx:100804628 904.049