Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03855 ATGTCATGCTTTATAAGTCACAACATTCGGCTGTTAATTTTACAGGTTGTGGTATTCTTTTCAACATGTGACGCAGTAGATTTTCACTATTCACTATTAAGTGAATTCCAATTTTCATCCTATCCACAAACAGAAGGAGGGATCAAACAGATGTTTCTTGGGTGCAAAACTTTTCGATTACATGGTAATATGGAACAGGAAGATCGGCTAAAAGCTTTTCAGGCCTTTAAAACAGAGAAATCTGCTCTGCTTTTGTCCACTGATGTTTCTGCTCGAGGTCTGGATTTTCCGAAGGTTAGATGCATCATACAGTATGATTCTCCTGGGGAAGCTACTGAATATGTGCATAGAGTTGGTAGAACTGCTCGGCTGGGTGAAAAAGGAGAATCATTGTTATTTCTGCAACCAGTTGAAATAGACTATTTACAGGACTTGGAGAAACATGGTGTCTCATTAACAGAGTATCCTCTCCTCAAAGTCTTGGATAATTTTCCTCTGCATGGACAACAGAAACACTTAAAGAAATCTGTTTTCATAGATTCACATCCCTGGGTCCTCTCTCTCCAGAAGGCACTTGAATCCTTCATCATTTCCAAGCCTAAGATGGATGAATTTGCCAGGAGGGCATTTTGCTCTTGGGTCCGTGCATACACAGCACATCGCGGTGAGCTGAAAAGAATATTTATGATCAAGAAACTTCACTTGGGGCATGTAGCAAAAAGCTTTGCATTGAAACAACAACCCTCCTTAGTTGGACAGTCATTCCAGAAGCAAACTCAGAAGAGGAAGAGATATGAAAAGAAAAATGGGCTGTCAAAAAGGAGAAAAGTTGCAAGGGTGACATAA 846 0.4019 MSCFISHNIRLLILQVVVFFSTCDAVDFHYSLLSEFQFSSYPQTEGGIKQMFLGCKTFRLHGNMEQEDRLKAFQAFKTEKSALLLSTDVSARGLDFPKVRCIIQYDSPGEATEYVHRVGRTARLGEKGESLLFLQPVEIDYLQDLEKHGVSLTEYPLLKVLDNFPLHGQQKHLKKSVFIDSHPWVLSLQKALESFIISKPKMDEFARRAFCSWVRAYTAHRGELKRIFMIKKLHLGHVAKSFALKQQPSLVGQSFQKQTQKRKRYEKKNGLSKRRKVARVT. 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03855 281 Gene3D - 5 278 IPR027417 -
Seca5g03855 281 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 164 IPR027417 -
Seca5g03855 281 CDD SF2_C_DEAD 15 134 - -
Seca5g03855 281 MobiDBLite consensus disorder prediction 253 281 - -
Seca5g03855 281 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 8 172 IPR001650 -
Seca5g03855 281 SMART DUF4217_3 187 252 IPR025313 -
Seca5g03855 281 Pfam Helicase conserved C-terminal domain 15 125 IPR001650 -
Seca5g03855 281 SMART helicmild6 42 125 IPR001650 -
Seca5g03855 281 MobiDBLite consensus disorder prediction 261 281 - -
Seca5g03855 281 Pfam Domain of unknown function (DUF4217) 189 249 IPR025313 -
Seca5g03855 281 PANTHER RNA HELICASE 15 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03855 Seca-Chr5 95580284 95584109 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03855 11 157 Eukaryotic Initiation Factors Gene Family AT3G19760 30.405 2.70e-18 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03855 K14806 - gmx:100805157 474.167