Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03854 ATGGGGACGAAGAAGAGTAATCAGGTGAATGAGAAGAAGGGTGTCGACAATGGCACCAACAGCAGTGTTTTTGCTTCTTGCTCCTTCTCTAGCCTTGGTCTCCACCCCTCCTTATGTGACCAACTTCGTGGTATTCTTCTTCTTCTTTGTTTTGTGAATTTGGTTGCCAATGATTCTGGAGGCATGCCTGAAAGGCTGGGTTTTGAAGTTCCAACATTGGTGCAAGCTCAAGCAATTCCTGTTATTCTCTCCGGGCGTCATGCACTGGTTAATGCTTCCACGGGCACGGGGAAGACAATTGCCTACCTAGCTCCAATTATTCATCACTTGCAGAATTATGAAAATCGAATCCAGCGCTCTGATGGGACATTTGGATACATTATGGGTGGTGAAAATAGATCAAAGGAGAAAGCCAGGCTGCGCAAAGGCATATCAATTCTCATAGCGACTCCTGGGCGCCTTTTGGATCACTTGAAGAATACATCATCATTCTTGTACACAAATTTGCGCTGGATAATTTTTGACGAAGCTGATATGATTTTGGAATTAGGATTTGGAAAAGATATACAGGGAATACTAGATCTTTTAGGTTCAAGAAAAACAGGTCATGATGATCAAGAGAATGCAGTTCCAAGACCCTCCAAAATTCAAAGACAGAATTTGCTTTTGTCAGCCACCTTAAATGAGAAAGTAAACCACCTTGCTAAAATTAGTCTAGACAATCCAGTGACAATTGGTCTCGATGATAAAAAAATAGAACCAATTTCAACAATTAAAAGCCTTGATCATTCAGAATCTGATGAAGACAATGAAGACAAGTATTCCAGTAAAATACCAACAGTTGGAGATTATAAAGTCCCCGTACAGTTGATTCAGAGATACTTGAAAGCGCCATGTGGTTCACGGCTGCCAGTACTTCTTTCAATTCTTAAGCATCTTTTTGAAAGGGAACCTTCACAAAAGGTAAGGCTCAAACTCAATGTTCAGCCCCTATTCCTGGAATCCATAAGATGCTTTTAA 1020 0.4088 MGTKKSNQVNEKKGVDNGTNSSVFASCSFSSLGLHPSLCDQLRGILLLLCFVNLVANDSGGMPERLGFEVPTLVQAQAIPVILSGRHALVNASTGTGKTIAYLAPIIHHLQNYENRIQRSDGTFGYIMGGENRSKEKARLRKGISILIATPGRLLDHLKNTSSFLYTNLRWIIFDEADMILELGFGKDIQGILDLLGSRKTGHDDQENAVPRPSKIQRQNLLLSATLNEKVNHLAKISLDNPVTIGLDDKKIEPISTIKSLDHSESDEDNEDKYSSKIPTVGDYKVPVQLIQRYLKAPCGSRLPVLLSILKHLFEREPSQKVRLKLNVQPLFLESIRCF. 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03854 339 SMART ultradead3 67 258 IPR014001 -
Seca5g03854 339 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 27 - -
Seca5g03854 339 Pfam DEAD/DEAH box helicase 110 233 IPR011545 GO:0003676|GO:0005524
Seca5g03854 339 Gene3D - 1 121 IPR027417 -
Seca5g03854 339 Gene3D - 122 248 IPR027417 -
Seca5g03854 339 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 64 245 IPR027417 -
Seca5g03854 339 PANTHER RNA HELICASE 25 313 - -
Seca5g03854 339 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 79 245 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03854 Seca-Chr5 95578003 95579982 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03854 28 245 Eukaryotic Initiation Factors Gene Family AT3G13920 26.033 8.52e-12 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03854 K14806 - gmx:100805157 479.944