Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03852 ATGGAAGTCAAGCCCATGCTTCTGCAATTTTTTCTCCTTCTCTTACTACCTTTGCTCACGGTTCATGTACTCGCTTCAAATGCGACGCTTAACGAGACTTGTGGTTACTTCAATCGTACTCTCAATAGACACGCTCAAGCACCATGCCCGAATGGTTGGGTTATCGACCCTAATAAGACCAAGTGCTTTCTCCACCTTGGGAGGCCTCAATCTTGGAATGACTCAGAAACCTGTTGTAGTAAATACGGTGGACATTTAGCATCATTGAAATCGCTTCAGGAACTACACTTTGCTCAAAGCCTATGCGGTGAATCTATAAATAGTTGCTGGATTGGTGGAAGAGTCAACTCTACAGCTGGTTTTCAGTGGATCTGGTCTGACAATTCTCAATGGAATAATTCCATATTTCGTTTGGCTGATGTTCCAGCCAATTGTACTGGAAATGGACTATCCTGTCACAGGAACAATACAGACAATTTATGTACAGTAATGACTAATAACTCAAAATCTCTCATTGGTGAGAGATGTGACAATCCTCATGCTTCTCTGTGTATACTTGACATAGATATGAAATGTAACCATATGCACTGCCACAGGGAATACCTTATCATCCTTGCAGTGGTGAGTGCATTGATACTCTCAACAACATTAGCGGTGGTAGTTTGGCTTCTTGTATATAAGCGGGGCAAGAAGAGAAGGCGGTCTAGAAAACCATGTGATCCAGCAGCTTCACTTCCCTCGTGGAAAGTCTTTACCAAAGAGGAATTAAGATCTGTTACAAAGAATTTCAGTGAAGGTAACCGCCTCATTGGGGATGCCAAGACTGGTGGTACATACAGTGGGGTCCAACCAGATGGCTCAAAGGTTGCAGTTAAGAGATTAAAAAGATCAAGCTTTCAGAGGAAAAAGGAGTTCTATTCTGAAATTGGCAGGGTTGCAAGGCTTCGACATCCAAATCTGGTCGCTGTGATGGGATGCTGCTATGATCACGGTGACCGATACATTGTTTATGAGTTTGTTGCTAATGGACCCTTAGATAAATGGCTATATCACATACCAAGGGGAGGTCGCAGTTTAGATTGGACTATGAGGATGAAAATTGCAACAACACTTGCTCAAGGAATTGCGATATCATGA 1137 0.4266 MEVKPMLLQFFLLLLLPLLTVHVLASNATLNETCGYFNRTLNRHAQAPCPNGWVIDPNKTKCFLHLGRPQSWNDSETCCSKYGGHLASLKSLQELHFAQSLCGESINSCWIGGRVNSTAGFQWIWSDNSQWNNSIFRLADVPANCTGNGLSCHRNNTDNLCTVMTNNSKSLIGERCDNPHASLCILDIDMKCNHMHCHREYLIILAVVSALILSTTLAVVVWLLVYKRGKKRRRSRKPCDPAASLPSWKVFTKEELRSVTKNFSEGNRLIGDAKTGGTYSGVQPDGSKVAVKRLKRSSFQRKKEFYSEIGRVARLRHPNLVAVMGCCYDHGDRYIVYEFVANGPLDKWLYHIPRGGRSLDWTMRMKIATTLAQGIAIS. 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03852 378 Gene3D Phosphorylase Kinase; domain 1 240 339 - -
Seca5g03852 378 SMART CLECT_2 49 185 IPR001304 -
Seca5g03852 378 FunFam C-type lectin receptor-like tyrosine-protein kinase 241 339 - -
Seca5g03852 378 Pfam Protein tyrosine and serine/threonine kinase 283 375 IPR001245 GO:0004672|GO:0006468
Seca5g03852 378 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 142 375 - -
Seca5g03852 378 SUPERFAMILY Protein kinase-like (PK-like) 238 376 IPR011009 -
Seca5g03852 378 CDD CLECT 61 184 - -
Seca5g03852 378 Pfam Lectin C-type domain 69 184 IPR001304 -
Seca5g03852 378 ProSiteProfiles C-type lectin domain profile. 58 185 IPR001304 -
Seca5g03852 378 SUPERFAMILY C-type lectin-like 24 185 IPR016187 -
Seca5g03852 378 Gene3D - 35 187 IPR016186 -
Seca5g03852 378 ProSiteProfiles Protein kinase domain profile. 264 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03852 Seca-Chr5 95568192 95574429 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03852 79 377 Receptor kinase-like Gene Family AT1G52310 63.312 1.21e-123 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_C-LEC Seca5g03852 Lectin_C 7.2e-11 CL0056
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03852 - - gmx:100779497 622.468