Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03850 ATGCAGGCCCAACTCACACTTCTGCTCACTACTCTCCTCCTCTCCCTCTTGTTCACGTTCTCGTGCGCCGCCCAAGCCCAAGATCTGGTCCGTTCCTCATGCGTCCACGCCAGGTACCCAAGGTTGTGTCTTCGAACCTTGTCCAACTACGCTGGGCCTGCCAACAGCACATTGGACGTGGCCCGGGCCGCGCTGAGGGTGAGCCTGGCGCACGCCCGTAGGGCCTCCAAGTACCTGCGGGCTTCCAAAGGAGGCGCCAGCAGCAGCAGCTTGAGCAAGCGGCAACGGGCCGCACTGAGTGACTGCGTGGAGCAGGTATCGGATTCAGTGGAGGAGCTGCGGAAAAGCCTGGAGGAACTGCAGCACCTACGCCCAGAGACATTCCGGTGGCAGATGAGTAACGCCATGACGTGGGTCAGTGCCGCCCTTACCGACGGCGATACCTGCCTCGACGGCAATGTCAGGCCCGACGTGAAGCGCAGAGTCACCGACTTAGCAAGGGTCACCAGCAATGCTCTTTACATGATCAATCGTCTGGGCCAAGGTGGGACTGGGAAGCCCAAGCCTCGTTCTGGCCCGGGCTCAAATTCCAATAACTGA 600 0.6067 MQAQLTLLLTTLLLSLLFTFSCAAQAQDLVRSSCVHARYPRLCLRTLSNYAGPANSTLDVARAALRVSLAHARRASKYLRASKGGASSSSLSKRQRAALSDCVEQVSDSVEELRKSLEELQHLRPETFRWQMSNAMTWVSAALTDGDTCLDGNVRPDVKRRVTDLARVTSNALYMINRLGQGGTGKPKPRSGPGSNSNN. 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03850 199 Coils Coil 103 123 - -
Seca5g03850 199 NCBIfam pectinesterase inhibitor domain 3 179 IPR006501 GO:0004857
Seca5g03850 199 CDD PMEI-like_3 32 179 - -
Seca5g03850 199 PANTHER PECTINESTERASE INHIBITOR-LIKE 12 174 - -
Seca5g03850 199 MobiDBLite consensus disorder prediction 178 199 - -
Seca5g03850 199 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 27 179 IPR035513 -
Seca5g03850 199 Gene3D Invertase/pectin methylesterase inhibitor family protein 24 180 IPR035513 -
Seca5g03850 199 SMART PMEI_2 25 175 IPR006501 GO:0004857
Seca5g03850 199 FunFam Pectinesterase inhibitor 3 25 180 - -
Seca5g03850 199 Pfam Plant invertase/pectin methylesterase inhibitor 28 174 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03850 Seca-Chr5 95542301 95542900 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03850 29 179 Carbohydrate Esterase AT3G14310 30.247 1.04e-17 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03850 - - gmx:100816686 263.077