Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03844 ATGGAATACGGTGGAGGCTCCAAACTAACAGGAATTAGGCAGATTGTGAGACTAAAGGAAATACTTCAAAAGTGGCAAAGTGTCACCTTGACCTCAAAAAATGACCCTCCCAAATCTGATGCAACTCATGAGAGAAGATCACCAATAATTAACAAAAGGATAACAAATGTTATGAGTTGTGACTCCGATGAGGATAGCTGCCAAAGTCCTGAACCACCACCTGATGTTCCAAAAGGTTACTTGGCAGTGTATGTTGGACCAGAGCTTCGGAGGTTCATCATCCCCACCAGCTACCTTAGCCACTCTCTATTCAAAGTTTTGCTGGAAAAGGCTGCTGAGGAATTTGGGTTTGATCAGAGTGGCGGGCTCACTATCCCATGTGAGATTGAGACCTTTAAATACCTCCTCAAATGCATGGAGAGCCAGCAGAATGAACACCATGATGAAAGCTCGTGTGATGAAAACACAGCAACTTTGGAAGATTAA 486 0.4362 MEYGGGSKLTGIRQIVRLKEILQKWQSVTLTSKNDPPKSDATHERRSPIINKRITNVMSCDSDEDSCQSPEPPPDVPKGYLAVYVGPELRRFIIPTSYLSHSLFKVLLEKAAEEFGFDQSGGLTIPCEIETFKYLLKCMESQQNEHHDESSCDENTATLED. 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03844 161 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 56 135 IPR003676 GO:0009733
Seca5g03844 161 Pfam Auxin responsive protein 59 138 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03844 Seca-Chr5 95441185 95442286 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03844 1 160 Calmodulin-binding Proteins AT3G43120 65.644 2.23e-72 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03844 K14488 - cpap:110808074 246.128