Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03837 ATGGGCAACAAGGTCTGTATTCTTTGTGTCCCTGTGAAAGGTAAAAAAAAGGTTAGAAGAAGAAAGCCTTCAAACTCATCTGCTACATTTTCTTCCATTACTCTGTCTTCCATTGCTAGCTTGAACCTAGACAACTTTTTGGAGGCCAATGCTTCTACCCCTCTTCCTATAAACGACAAATTCTCACTTTTCACTTGTCAGATTTGCTATCAAAAGAAGCCTCTAAACGACTCCTTCAATGTGGAGGGTTGTCCCCATTTTTACTGCATCAAATGCATTGTCAAATACATAGTGTATAGGCTCAAACAAAACGAGCTGGACCTTATGTGCCCTGTGGGAGGGTGTTCTGGGGTCTTGAATCCTCATTATTGCAAGCCAATTCTACCAAACAATGTGTTAGCTTGGTGGGAGAAGGCTCTGTGTGAATCAGTGATTCCTGAGAAGGAGAAATTCTATTGTCCTTACAATGATTGCTCAGTCTTATTATTCAATGAGGCTCAGGAAAATGGAAAGGTCATTATAGACTCAACTTGTCCTCATTGTGAGAGAAGCATTTGTGTTCAGTGTAAAACTCCTTGGCATCAAGACTTGACTTGTGACAAGTTTCAAAGAATGCAGGACAACTCAGAGGAACTATTATTGTATCTTCTCGCCAAGAGAAGAAATTGGAAACAGTGTCCAAACTGTAGGCATTATGTTGAAAAGAAAAGTGGGTGTGATGACATGATATGCAGGGTGCTCTCACAGGTTTTGTTACAACTGTGGAACTAG 771 0.406 MGNKVCILCVPVKGKKKVRRRKPSNSSATFSSITLSSIASLNLDNFLEANASTPLPINDKFSLFTCQICYQKKPLNDSFNVEGCPHFYCIKCIVKYIVYRLKQNELDLMCPVGGCSGVLNPHYCKPILPNNVLAWWEKALCESVIPEKEKFYCPYNDCSVLLFNEAQENGKVIIDSTCPHCERSICVQCKTPWHQDLTCDKFQRMQDNSEELLLYLLAKRRNWKQCPNCRHYVEKKSGCDDMICRVLSQVLLQLWN. 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03837 256 ProSiteProfiles TRIAD supradomain profile. 62 256 IPR044066 -
Seca5g03837 256 CDD BRcat_RBR_unk 147 202 - -
Seca5g03837 256 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 146 IPR013083 -
Seca5g03837 256 SMART ibrneu5 134 199 IPR002867 GO:0008270
Seca5g03837 256 FunFam RBR-type E3 ubiquitin transferase 62 147 - -
Seca5g03837 256 SUPERFAMILY RING/U-box 141 204 - -
Seca5g03837 256 Pfam IBR domain, a half RING-finger domain 140 199 IPR002867 GO:0008270
Seca5g03837 256 ProSitePatterns Zinc finger RING-type signature. 84 93 IPR017907 -
Seca5g03837 256 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 35 244 IPR031127 GO:0004842|GO:0016567
Seca5g03837 256 SUPERFAMILY RING/U-box 62 146 - -
Seca5g03837 256 Gene3D - 197 246 - -
Seca5g03837 256 ProSiteProfiles Zinc finger RING-type profile. 66 112 IPR001841 -
Seca5g03837 256 SUPERFAMILY RING/U-box 210 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03837 Seca-Chr5 95354895 95356171 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03837 65 245 C3H Transcription Factor Family AT2G19610 29.630 1.42e-22 94.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03837 K11975 - rcu:8259039 216.468