Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03836 ATGGCTTCTGATTCCGTTCCTTCTCTCAACGTGGTGGGATATACCGCTTCTCCACCAAAACACTCACCATCTCTCTTACTTAATATTCTCATAACCGTAACGGTCTTCGCCATCGCCGTCACCGTCTTCCTAGTTCTCTATTTCATCCTCCGTTGCCTCCGCCGTCTCTCTCCATCACCTTCCGCAGTATTCTCCTCCGACCATCGGATATCGCCGGGGATTACTAAGTCTTCCGCCGTCGACTTCCTCCCGCTGTTCTCCTTCTCTTCCATCAGCCGCCGCTCCTCCTCCGCCGGCGCTGACTGCGCAGTTTGCTTGTCGAAGTTCGAGCCGCGCGATCTTCTCCGCCTCCTCCCTCTCTGCTGTCACGCCTTCCACGCTGAATGCATCGACACCTGGCTCCGATCGAACCACACCTGTCCGCTCTGCCGTTCCGCCGTCTTCGCTTCGGAATCGGACCTCACGAAGGTTTTCCGGTCGTCTTCCACTGCCGGAGGGAACAGCTTCCGGCTGGAGATAGGTAACGTCAGCAGCCGCCGCGGAGCCGCAACTGACAATGCCGCCGGAGAAACTGGCGGGAGGTCCTATTCCATGGGCGCGTTTGAGTATTTTGTAGATGAGGAGGCTGAGGTTTCGTTCAGCCACGCTCACCGCAGAATCGTTTCCGGCGAAAAAGATGATTCACCGGCGGTAGAGTCCCAGGCGGATTCTCAGCCAAGCTTGGCTGGCGAGGTTGGACGTGAAAGCAGCTGGTTGAAAGATTATGTTGATCGGCTCTCTGCTACGATGTCATTTCGAAGCTCCGGAAGGTTCTTCACTGGGAGTAGTCGGCGAAGCGACGTCGTTGGAGTAGGAGATTACGAAGTGGAAGCCAATCGTTTTGGGGAAGAAATCAGCGAAATGTTTAGTTGGCTCTCAGGGGTTTGA 927 0.5566 MASDSVPSLNVVGYTASPPKHSPSLLLNILITVTVFAIAVTVFLVLYFILRCLRRLSPSPSAVFSSDHRISPGITKSSAVDFLPLFSFSSISRRSSSAGADCAVCLSKFEPRDLLRLLPLCCHAFHAECIDTWLRSNHTCPLCRSAVFASESDLTKVFRSSSTAGGNSFRLEIGNVSSRRGAATDNAAGETGGRSYSMGAFEYFVDEEAEVSFSHAHRRIVSGEKDDSPAVESQADSQPSLAGEVGRESSWLKDYVDRLSATMSFRSSGRFFTGSSRRSDVVGVGDYEVEANRFGEEISEMFSWLSGV. 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03836 308 ProSiteProfiles Zinc finger RING-type profile. 102 144 IPR001841 -
Seca5g03836 308 SMART ring_2 102 143 IPR001841 -
Seca5g03836 308 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 76 150 IPR013083 -
Seca5g03836 308 MobiDBLite consensus disorder prediction 223 244 - -
Seca5g03836 308 FunFam E3 ubiquitin-protein ligase ATL6 64 150 - -
Seca5g03836 308 SUPERFAMILY RING/U-box 97 149 - -
Seca5g03836 308 Pfam Ring finger domain 101 144 IPR001841 -
Seca5g03836 308 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 19 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03836 Seca-Chr5 95352046 95352972 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03836 73 171 C3H Transcription Factor Family AT4G28890 50.505 9.20e-23 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03836 K10663 - gmx:100804962 333.183