Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03833 ATGAGAACACAAGAGTTGGCAATAATCTTTTTAGTGTTAGGATGTGCACTGACGCAGGTCTCCATGTCAGAAGCGGTCTTAGGTGGTCACCCAAAGCATGATCACTATGAATGCAATTTTACAAGATATCCTAATCTTTGTGCTGAAACGTTGAGGGTCAGTGGATTAGGTTCTGGGAATCAAAATGTTGATATCATTCAGACCCTTGTTAACAAAACCATATTTGAAACCAACTTGCCAACTTCATATTTTGCTGAATTCAAGACTGATCAGGATGCTCAACAAACACATTCTGTCGCAGACTACTGTGAAGAGTTAATGAGCATGTCACTGAAAAGGCTAGACCAATCCTTGAAAGCACTGAAATCCCCAACAAGAAACAAGAATGACATCCAAACATGGCTAAGTGCTTCTCTAACTTTCCAACAAGCTTGTAAAGACCATGTAGATGCACACACCTCTAAACTCTCTATAGCAGATGATGACCTCATCATGGAAAGAATGTCTAAGAAGATGGACTATCTTTCTAAACTGGGAAGCAACTCATTAGCACTTGTTAATCGGATCACCAACAATGCAAAGAGTGGTAATGAAAAGGAACATGAATCATTTCCAAAGTGGGTGTCTTCCAAAGGACGAAAACTCCTTCAGGGAGCCAGCACCATAAAAGCCAATGTCATAGTGGCACAAGATGGAACAGGAAACTACAAGACAGTTTCTGAAGCCATTGAAGCAGCTCCAGGGACACGGTTTGTGATTTATGTTAAGGCGGGGATTTATAAGGAGAAGATTCGTGTTAAGAAGGATGGTATCACTTTGATAGGAGAAGGCAAATATTCTACTATCATTGTTGGAGATGACAGTGTTGCTCAGGGTGGTGCTACCTTACCTGGCTCTGCCACATTCTCAATAACAGGAGATGGATTTATTGCACGAGATATTGGTTTCCACAACAATGCTGGACCACGAGGTGAACAAGCCGTGGCATTGCTCATTTCTTCTGATCGTTCAGTACTCTATAGATGCAGCATAGTAGGATACCAAGACACCCTCTATGCACTTTCACTTCGCCAATTCTACAAAGAATGTGACATCCATGGCACCATAGACTTCATCTTTGGTAACGCAGCTGCAGTTTTCCAAAGCTGCAACTTGGTGCTTCGTCACCCATATGGTAAAGGCTACAATGTCATTCTAGCCAATGGAAGAACAGACCCGGGACAGAACACTGGTTTCTCTGTTCATAAGTGTGTCATAACAACAAGCTCAGATTTTTCTCATGTGAAACATTCCTATAGTTCTTTTCTTGGGAGGCCTTGGAAGGAGTATTCTAGGTCTGTGGTGATGGAGTCAACTATAGATGATGCTATTGCAGGTAGAGGTTGGATTGAGTGGCCTGGTTATGGAAGTTCTGTGTTGAAAACTCTGTATTATGCAGAGTATGCTAATGAAGGCCCTGGTGCTGGAACTGCCAAGAGGGTTCAATGGCCTGGTTTTCATGTTGTTGGAGCTGAAGAGGCTGCAAAGTTCACTGTTGCTAATTTCATTGGTGGAAGTTCATGGATTCCCTCAAGTGAGGTCACATTCATTTCAGGACTTAACTAA 1605 0.4231 MRTQELAIIFLVLGCALTQVSMSEAVLGGHPKHDHYECNFTRYPNLCAETLRVSGLGSGNQNVDIIQTLVNKTIFETNLPTSYFAEFKTDQDAQQTHSVADYCEELMSMSLKRLDQSLKALKSPTRNKNDIQTWLSASLTFQQACKDHVDAHTSKLSIADDDLIMERMSKKMDYLSKLGSNSLALVNRITNNAKSGNEKEHESFPKWVSSKGRKLLQGASTIKANVIVAQDGTGNYKTVSEAIEAAPGTRFVIYVKAGIYKEKIRVKKDGITLIGEGKYSTIIVGDDSVAQGGATLPGSATFSITGDGFIARDIGFHNNAGPRGEQAVALLISSDRSVLYRCSIVGYQDTLYALSLRQFYKECDIHGTIDFIFGNAAAVFQSCNLVLRHPYGKGYNVILANGRTDPGQNTGFSVHKCVITTSSDFSHVKHSYSSFLGRPWKEYSRSVVMESTIDDAIAGRGWIEWPGYGSSVLKTLYYAEYANEGPGAGTAKRVQWPGFHVVGAEEAAKFTVANFIGGSSWIPSSEVTFISGLN. 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03833 534 ProSitePatterns Pectinesterase signature 2. 365 374 IPR033131 -
Seca5g03833 534 Gene3D - 218 533 IPR012334 -
Seca5g03833 534 Gene3D Invertase/pectin methylesterase inhibitor family protein 35 191 IPR035513 -
Seca5g03833 534 Pfam Pectinesterase 225 518 IPR000070 GO:0030599|GO:0042545
Seca5g03833 534 PANTHER PECTINESTERASE 22 523 - -
Seca5g03833 534 SMART PMEI_2 30 185 IPR006501 GO:0004857
Seca5g03833 534 SUPERFAMILY Pectin lyase-like 220 531 IPR011050 -
Seca5g03833 534 FunFam Pectinesterase 219 533 - -
Seca5g03833 534 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 38 190 IPR035513 -
Seca5g03833 534 Pfam Plant invertase/pectin methylesterase inhibitor 38 185 IPR006501 GO:0004857
Seca5g03833 534 FunFam Pectinesterase 31 190 - -
Seca5g03833 534 CDD PMEI-like_3 38 191 - -
Seca5g03833 534 NCBIfam pectinesterase inhibitor domain 8 184 IPR006501 GO:0004857
Seca5g03833 534 ProSitePatterns Pectinesterase signature 1. 247 266 IPR018040 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03833 Seca-Chr5 95326862 95330012 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03833 38 534 Carbohydrate Esterase AT3G49220 41.779 1.65e-128 387
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03833 K01051 - gmx:100795439 803.897