Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03832 ATGGCTCTTTCTTCAACAAGAGAGTTTTCTCGAACACTAACACCCACTATCACACTCATCTTCTCCTTGGTGTTGCTTCTAGGCCTGTGCACGCCACGGGGTGCTGCTGCTCCCACTGACATTGTGGGATTAGAGTGCTTGAAGGTTGCTCCTTCTGAATTCGCTGGGTCAGTGAGAGCTGTCGTTGGCATTTTGCAAGATGTTATCTCTATTCTCTCAGAGTTCGGCAATGGCTTCGGCGATTTTCGTCTCTCTAATGCCATTTCTGATTGCCTCGATTTGCTTGATCTCTCCTCTGATGAACTTGACTGGTCTGTCTCCGCTACACAGACTCCCAAAGGGAAGCATAACAGTACTGGGAAGTTGAGTTCTGATTTGAGGACATGGTTAAGTGCTGCACTTGCGAATCCAGAGACATGCATGGATGGATTTGAAGGTACAAATGGCATGGTGAAGGGTCTAGTATCCACTGGCCTTGGTCAAATGATGTCGTTGCTGAAGCAGCTTCTAACCCAGGTGGACCCTGTTTCGGATCACTTCATGGGGCAGAGTAAGGGTGAATTTCCTTGGTGGGTTAAACCAGGGGAAAGGAAGCTGCTGCAGGAAAATGGGGTGCGTGTGGATGCTGTGGTGGCTGCTGATGGGAGTGGGAACTATACTAAGGTGATGGATGCGGTGTTGGCAGCACCTGATTATAGCATGGAACGCTATGTGATACATATTAAGAGGGGTGTTTACAATGAGAATGTGGAGATCAAGAAGAAGAAATGGAACCTCATGATGATTGGAGATGGCATGGATGCTACTGTTATCTCGGGTAACCGGAGTTTCATCGACGGTTGGACCACATTCCGGTCAGCTACCTTTGGTGAGAACACACTACTCTTTTCTTTCTTTCTTGCATGTGCAGCTGTTAGTGGTAGAGGGTTCATAGCACGAGACATCACCTTCCAGAACACTGCAGGCCCCGAGAAGCACCAAGCAGTGGCTCTAAGATCTGACTCTGACCTCTCTGTATTTTACCGATGTGGGATCTTTGGTTACCAAGACAGCCTCTATACCCATACCATGCGCCAATTCTACAGAGAATGCAAAATCACTGGCACTGTGGATTTCATCTTTGGAGATGCTACTGCTCTGTTCCAAAACTGCCAAATTATGGCCAAGAAAGGGTTACCAAATCAAAAGAACACCATCACAGCTCATGGGAGAAAAGACCCTGATGAACCAACTGGTTTCTCCATCCAATTCTGCAACATCTCTGCTGATTCTGACCTTCTCAACTCAGTTAATTCCACTCAGACATACCTTGGAAGACCATGGAAACCATATTCTAGAACAATTTTCATGCAATCTTACATAAGTGATGTGTTAAGGCCAGAAGGGTGGTTAGAGTGGAATGGGGATTTTGCTTTGGACACATTGTATTATGCAGAGTACATGAATTATGGGCCAGGAGCAGGACTTAATAACCGAGTTAAATGGCCAGGGTATCATGTGATGAATGATTCTAGTCAAGCTAGTAACTTTACGGTGACCCAATTTATTGAGGGGAATCTGTGGTTACCTTCAACAGGTGTAACGTTCACTGCTGGATCCAATGCCACCACAACATTACACACCAAGCTCTCTTCCTTGAGATCTTTCTGCAGCACTACTCCATACCCAGAAGTTTGCTTCAATTCATTGAAGCTGTCCATTTCAATAAATATAAGCCCAAACATCATCAACTACCTCCTTCAGTCCCTCCAAGTAGCAATATCTGAAGCCACAAAGCTCTCTAACCAATTCCACAATGCAGGACACTCCAACATCATAGAGAAGCAAAGAGGAGCAGTCCAAGATTGCAGGGAACTTCACCAATCCACATTGGCTTCTTTGAAAAGATCCTTATCTGGGATTCGTTCCCCCAACACTAGGAATCTAGTTGATGCAAGAACATACCTCAGTGCAGCACTCACCAACAAGAACACATGTCTAGAAGGCCTAGATTCTGCTTCTGGTACACTGAAGCCAGTTTTGGTGAACTCTGTCATCAACACTTACAAGCATGTGAGTAATTCTCTTTCTATGCTCTCTAAGCCAGGGGTAGGGGCTCCCAAAGGCCACAAGAACCGGCGTCTGATGAGTGCTCCAAAGTGGTTGTCAAGAAGAGGCCGTAGCCTCTTGCAAAACTCAGATGGGGAAGAATATGATCCAAATGAAATGCTTGTTGTGGCTGCAGATGGAACTGGGAACTTCAGCACCATTACTGATGCAATCAACTTTGCTCCAAATAACAGCATGGATAGGGTAGTGATCTATGTCAAGGAAGGGGTTTATGAGGAAAATGTAGAAATCCCAAGTTATAAGACCAACATTGTTATGCTTGGAGATGGAAGTGATGTCACTGTCATAACTGGTAACAGAAGTATGGTTGGTGGCTGGACCACTTTCAGATCTGCAACTCTAGCGGTTTCTGGTGATGGTTTTCTTGCAAGAGATATAGCATTTGAGAACAGTGCAGGGCCAGAGAAACATCAAGCAGTTGCCTTGAGGGTCAATGCAGATTTGACTGCATTTTACAGGTGTGCCATTTATGGTTACCAAGACACTCTGTATGTTCACTCCTTTAGACAATTCTATAGAGAGTGTGACATTTATGGGACCATAGATTACATATTTGGGAATGCAGCAGTGGTTCTACAAGAATGTAACATTGTATCAAGAATGCCATTGCCTGGCCAATTCACTGTTATTACAGCTCAATCCAGAGATAACCCAGATGAGGACACTGGCATCTCAATCCAAAACTGCTCAATTATAGCTACCAGTGATCTTTATTCCAACTCTAACAGCTTCAAGAGTTACCTTGGGAGGCCATGGAGGGTCTATTCTCGCACTGTTTACCTTGAGTCTTATATTGATGACTTTATTGATCCAAAGGGTTGGTCAAAGTGGACTAATGATCAAGGGTTGGACACATTGTATTATGGAGAGTATGAGAATTATGGACCTGGTTCAACTACAGATAATAGGGTAGGATGGCTTGGTTACCATTTAATGGATTACAATGATGCCTATAATTTCACAGTTTCAGAGTTCATTACTGGTGATGATTGGCTTGAGTCTACTTCTTTTCCTTATAATGATGATTTTGATCTCATATCAGAAAGGAGAAAAAATGAGAAGAGACAAAAGCTGAAGAAGAAGATTATGATTGGTCTAGTTTCAGCCATTCTCCTTGCATGTATAATAGGTGCTGCAGCATTTGTTATAGTTAATAGATCTGGTCCTGACACCACCAACAACACCAAGCATAAGGCTCCCTCAGCACCTGCCAATAATGCTCAACCTCAACATGTGGATAAATTTTCCAGACTTGTGAAAATGATATGTAGTTCTGCAGTATACAAGAGCAAATGTGAAAGCACCCTTACTGAGGCATTGAAGAAGGACCCCAAATTGGCACAACCAAAGAATCTTCTCATGGTTTCTATGATACTTGCTGAGGCTGAGGTTAACAAGGCCTTCAACAAAACCACCACCTTGAAGTTTGCTTCTGAGCAGGAGAAAGGAGCATATGAAGATTGCAAGCAGTTGTTTGAGGATGCTAAGGAAGAGATGGGATTCTCTATCACTGAAGTTGGTTCAAATGATTTGACCAAGCTTTCCACAAAAGCTCCTGAAATTAATAACTGGCTCAGTGCAGTCATGTCTTACCAACAAACCTGCATTGATGGGTTTCCTGAAGGAAAGTTGAAGGATGAATTTGAGAAGCTTTTCAAGGAATCCAGGGAACTTGTTAGCAATTCCCTTGCTGTTGTGTCACAAGTGTCTTCCTTCTTTAGTGCATTCCAAGGAGCTTCAGATATTCATTTTCCATGGTTGAAAACTGATGCCCCTGCACCTGCTCCTGATTCTGCTTCTGATCTTTTTCCTGCTCCTGCACCTGCTCCTGGTCCTGTTGCTGATGGTCCTGCTCCTGTTTATGCTCCTGGTCCTGCTCCTGCTCCTGCTTGGCTTAGCCCTCCTGAGTTGGTGGGAACACTTGAGAAACCCACACCTAATGTCACTGTGGCAAAAGATGGCAGTGGAAACTTCAAAACCATCTCTGAAGCTTTGGCAGCTATCCCACAAAACTACGAAGGAAGGTATGTTCTGTCATAG 4149 0.4411 MALSSTREFSRTLTPTITLIFSLVLLLGLCTPRGAAAPTDIVGLECLKVAPSEFAGSVRAVVGILQDVISILSEFGNGFGDFRLSNAISDCLDLLDLSSDELDWSVSATQTPKGKHNSTGKLSSDLRTWLSAALANPETCMDGFEGTNGMVKGLVSTGLGQMMSLLKQLLTQVDPVSDHFMGQSKGEFPWWVKPGERKLLQENGVRVDAVVAADGSGNYTKVMDAVLAAPDYSMERYVIHIKRGVYNENVEIKKKKWNLMMIGDGMDATVISGNRSFIDGWTTFRSATFGENTLLFSFFLACAAVSGRGFIARDITFQNTAGPEKHQAVALRSDSDLSVFYRCGIFGYQDSLYTHTMRQFYRECKITGTVDFIFGDATALFQNCQIMAKKGLPNQKNTITAHGRKDPDEPTGFSIQFCNISADSDLLNSVNSTQTYLGRPWKPYSRTIFMQSYISDVLRPEGWLEWNGDFALDTLYYAEYMNYGPGAGLNNRVKWPGYHVMNDSSQASNFTVTQFIEGNLWLPSTGVTFTAGSNATTTLHTKLSSLRSFCSTTPYPEVCFNSLKLSISINISPNIINYLLQSLQVAISEATKLSNQFHNAGHSNIIEKQRGAVQDCRELHQSTLASLKRSLSGIRSPNTRNLVDARTYLSAALTNKNTCLEGLDSASGTLKPVLVNSVINTYKHVSNSLSMLSKPGVGAPKGHKNRRLMSAPKWLSRRGRSLLQNSDGEEYDPNEMLVVAADGTGNFSTITDAINFAPNNSMDRVVIYVKEGVYEENVEIPSYKTNIVMLGDGSDVTVITGNRSMVGGWTTFRSATLAVSGDGFLARDIAFENSAGPEKHQAVALRVNADLTAFYRCAIYGYQDTLYVHSFRQFYRECDIYGTIDYIFGNAAVVLQECNIVSRMPLPGQFTVITAQSRDNPDEDTGISIQNCSIIATSDLYSNSNSFKSYLGRPWRVYSRTVYLESYIDDFIDPKGWSKWTNDQGLDTLYYGEYENYGPGSTTDNRVGWLGYHLMDYNDAYNFTVSEFITGDDWLESTSFPYNDDFDLISERRKNEKRQKLKKKIMIGLVSAILLACIIGAAAFVIVNRSGPDTTNNTKHKAPSAPANNAQPQHVDKFSRLVKMICSSAVYKSKCESTLTEALKKDPKLAQPKNLLMVSMILAEAEVNKAFNKTTTLKFASEQEKGAYEDCKQLFEDAKEEMGFSITEVGSNDLTKLSTKAPEINNWLSAVMSYQQTCIDGFPEGKLKDEFEKLFKESRELVSNSLAVVSQVSSFFSAFQGASDIHFPWLKTDAPAPAPDSASDLFPAPAPAPGPVADGPAPVYAPGPAPAPAWLSPPELVGTLEKPTPNVTVAKDGSGNFKTISEALAAIPQNYEGRYVLS. 1383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03832 1382 SMART PMEI_2 37 176 IPR006501 GO:0004857
Seca5g03832 1382 SMART PMEI_2 1117 1268 IPR006501 GO:0004857
Seca5g03832 1382 SMART PMEI_2 541 691 IPR006501 GO:0004857
Seca5g03832 1382 MobiDBLite consensus disorder prediction 1296 1323 - -
Seca5g03832 1382 ProSitePatterns Pectinesterase signature 2. 366 375 IPR033131 -
Seca5g03832 1382 Gene3D Invertase/pectin methylesterase inhibitor family protein 542 694 IPR035513 -
Seca5g03832 1382 MobiDBLite consensus disorder prediction 1093 1112 - -
Seca5g03832 1382 Pfam Pectinesterase 208 519 IPR000070 GO:0030599|GO:0042545
Seca5g03832 1382 Pfam Pectinesterase 737 1032 IPR000070 GO:0030599|GO:0042545
Seca5g03832 1382 ProSitePatterns Pectinesterase signature 1. 233 252 IPR018040 -
Seca5g03832 1382 MobiDBLite consensus disorder prediction 1302 1323 - -
Seca5g03832 1382 CDD PMEI-like_4 16 173 - -
Seca5g03832 1382 CDD PMEI-like_3 1125 1274 - -
Seca5g03832 1382 Gene3D - 1330 1382 IPR012334 -
Seca5g03832 1382 FunFam Pectinesterase 1118 1273 - -
Seca5g03832 1382 PANTHER PECTINESTERASE 85 523 - -
Seca5g03832 1382 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 58 163 IPR035513 -
Seca5g03832 1382 FunFam Pectinesterase 542 694 - -
Seca5g03832 1382 SUPERFAMILY Pectin lyase-like 1347 1380 IPR011050 -
Seca5g03832 1382 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 546 694 IPR035513 -
Seca5g03832 1382 NCBIfam pectinesterase inhibitor domain 539 693 IPR006501 GO:0004857
Seca5g03832 1382 NCBIfam pectinesterase inhibitor domain 1115 1272 IPR006501 GO:0004857
Seca5g03832 1382 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 1120 1272 IPR035513 -
Seca5g03832 1382 ProSitePatterns Pectinesterase signature 2. 880 889 IPR033131 -
Seca5g03832 1382 FunFam Pectinesterase 34 175 - -
Seca5g03832 1382 SUPERFAMILY Pectin lyase-like 735 1043 IPR011050 -
Seca5g03832 1382 Gene3D - 732 1046 IPR012334 -
Seca5g03832 1382 Gene3D - 203 533 IPR012334 -
Seca5g03832 1382 FunFam Pectinesterase 202 533 - -
Seca5g03832 1382 Pfam Plant invertase/pectin methylesterase inhibitor 545 691 IPR006501 GO:0004857
Seca5g03832 1382 Pfam Plant invertase/pectin methylesterase inhibitor 86 166 IPR006501 GO:0004857
Seca5g03832 1382 Pfam Plant invertase/pectin methylesterase inhibitor 1121 1267 IPR006501 GO:0004857
Seca5g03832 1382 CDD PMEI-like_3 548 695 - -
Seca5g03832 1382 Gene3D Invertase/pectin methylesterase inhibitor family protein 1119 1273 IPR035513 -
Seca5g03832 1382 Gene3D Invertase/pectin methylesterase inhibitor family protein 51 173 IPR035513 -
Seca5g03832 1382 SUPERFAMILY Pectin lyase-like 206 531 IPR011050 -
Seca5g03832 1382 FunFam Pectinesterase 730 1046 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03832 Seca-Chr5 95299314 95316534 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03832 18 532 Carbohydrate Esterase AT3G43270 63.327 0.0 717
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03832 - - gmx:100776969 884.789