Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03825 ATGGATGGTGTCACTGTCAAGCCTGAGCCAGACCAGGTTTTGGCTCTAGAATCTTCTCCTGCTTTGGAGAATCATGGTGATAGTACAAACTTGGAGGAACACCTGGTCCAGCAGAACGTGGCTGATGGGTCAACCATGGATCTCCCTGCAAACAAATCTACACCAGCATCTGGACTGAATGCAGCGATTCCTAATGCAAATCAGCTTACCATCTTCTACAATGGAAGTGTTTGTATCTATGATGGAATTCCTGCAGAAAAGGTGCATGAAATAATGCTTATTGCTGCTGCTGCTGCCAAGTCTACTGAAATGAAGAAGATTGGGATGCAATCTCCTCTCCTTTCTCCTGTTCCCACAAGGCCTTCTTCTCCACATGGAACCACTGATAATGTTGCTTCAACACAGGCACTCTGCTTTCCTGCAAAGAAGAGTTCCATCTGCAGGCTGCAAGAATTTCCAATAGCACGCAGACATTCACTTCAAAGGTTTCTTGAGAAGAGGCGAGACAGGTTGGGGAGCAAAGCCCCTTATCCTTCCTCACCAACAACAAAAGTGGCTGACAACATAGACAACAACTTCTGTGCTGACAATGCACCAGATTTGGTTTCCATGAAACGATCAGAGGAGGAATTTCAGCCAACAGTCTCTGCCTCTTGA 657 0.4612 MDGVTVKPEPDQVLALESSPALENHGDSTNLEEHLVQQNVADGSTMDLPANKSTPASGLNAAIPNANQLTIFYNGSVCIYDGIPAEKVHEIMLIAAAAAKSTEMKKIGMQSPLLSPVPTRPSSPHGTTDNVASTQALCFPAKKSSICRLQEFPIARRHSLQRFLEKRRDRLGSKAPYPSSPTTKVADNIDNNFCADNAPDLVSMKRSEEEFQPTVSAS. 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03825 218 ProSiteProfiles Tify domain profile. 62 97 IPR010399 -
Seca5g03825 218 Pfam Jas motif 153 177 IPR018467 -
Seca5g03825 218 SMART tify_2 62 97 IPR010399 -
Seca5g03825 218 MobiDBLite consensus disorder prediction 176 190 - -
Seca5g03825 218 MobiDBLite consensus disorder prediction 171 191 - -
Seca5g03825 218 Pfam tify domain 64 96 IPR010399 -
Seca5g03825 218 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 46 184 IPR040390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03825 Seca-Chr5 95237114 95240375 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03825 67 180 Tify Gene Family AT5G20900 55.652 3.64e-32 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Seca5g03825 tify 1.5e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03825 K13464 - gmx:100306045 298.13