Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03817 ATGCGAGTGAAGGTTGAGGAAGCGAAGAAGGAGAATGAGAAATTGAGAGGTATGTTGAATCAGATTAATGAACAATGCATTCATCTTCAGAATCGCTTACTTTCGGCCATCCACCACCATCAACTATCTTCATCATCACCTCCAAATAATAATCATCACTACTTGCAGAAAGGAAATAGAAGAGAAGATGAGGAGAAATTAGCAGTGTTAGCCACCCGGCAGTTGTTAAATATGGGGGGTGAGCCTGCAGGAGGCGCATCTTCAGAATATTATTGCAGCAAAAGAGAAGGATTAATTGCCTCAGAGGAAAACACTGATTATATAAAGAAGCTTGGAGGTGAAATCAACAGCCAAATAACATCGCAACAAGATCAAGCATCTTGCAGGAAAGCTAGAGTGTCCATAAGGGCTCGATCTGATTTTTCTATGATGGGTGATGGGTGTCAATGGAGAAAGTATGGACAGAAGACAGCAAAGGGCAACCCTTGTCCCAGGGCCTACTATCGTTGCAGCATGGGAACCGCATGTCCAGTTCGTAAGCAGGTGCAAAGGTGTTTTAAGGATGAGACTGTTCTCATAACAACCTATGAAGGGAACCATAATCATCCACTCCCACCAGCAGCTAGACCAATGGCAAACTCAACATCAGCTGCATTGAACATGTTCCTTTCTGGCTCAACCACAAGTTTACATGGCACCACTATATCAAACACACACCTCTTCTCTTCATTATCTACCCCTGCTTCCACTGCTTTAGCTACTTTCTCCCCATCTGCAACTTGTCCCACAGTAACACTGGACTTTACTCAACCCACTAATACCTATTTGCAATTCCAAAAGGCCACTTCACAATCCTTATTCCCTTTCCCATTGCAAGGTTACCCTCAAACATCTGAGGGGTTGTACTTGAGTTCTAAGGTTCCAACAATGACAACCCCAGGGGAAAACAACAACCTTGTCTTGGTGGATGTTGTGAGTGAAGCTATATCCAAAGACCCTTCTCTCAAGGCAGCACTTTATGCAGCCATTTCCTCAGTCACTGCTAAAGATCCTCAGAACATGACCAATAACCACAACCAACATGGTAAGAGTGGTTATGACCCTTGTTCTAATCATGTAATTGTCAAATAA 1131 0.4332 MRVKVEEAKKENEKLRGMLNQINEQCIHLQNRLLSAIHHHQLSSSSPPNNNHHYLQKGNRREDEEKLAVLATRQLLNMGGEPAGGASSEYYCSKREGLIASEENTDYIKKLGGEINSQITSQQDQASCRKARVSIRARSDFSMMGDGCQWRKYGQKTAKGNPCPRAYYRCSMGTACPVRKQVQRCFKDETVLITTYEGNHNHPLPPAARPMANSTSAALNMFLSGSTTSLHGTTISNTHLFSSLSTPASTALATFSPSATCPTVTLDFTQPTNTYLQFQKATSQSLFPFPLQGYPQTSEGLYLSSKVPTMTTPGENNNLVLVDVVSEAISKDPSLKAALYAAISSVTAKDPQNMTNNHNQHGKSGYDPCSNHVIVK. 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03817 376 SMART WRKY_cls 144 204 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca5g03817 376 Gene3D WRKY domain 128 206 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca5g03817 376 Pfam WRKY DNA -binding domain 146 203 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca5g03817 376 FunFam probable WRKY transcription factor 31 129 206 - -
Seca5g03817 376 MobiDBLite consensus disorder prediction 41 61 - -
Seca5g03817 376 SUPERFAMILY WRKY DNA-binding domain 137 205 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca5g03817 376 Coils Coil 5 32 - -
Seca5g03817 376 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 1 359 IPR044810 GO:0003700
Seca5g03817 376 MobiDBLite consensus disorder prediction 350 370 - -
Seca5g03817 376 ProSiteProfiles WRKY domain profile. 139 205 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca5g03817 376 MobiDBLite consensus disorder prediction 350 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03817 Seca-Chr5 95153184 95157328 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03817 1 346 WRKY Transcription Factor Family AT4G04450 36.453 5.15e-65 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca5g03817 WRKY 8.1e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03817 - - gmx:100816719 402.519