Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03799 ATGGCATCTGATCTAAATTCGGGCTTGTCCAAGAAAACATTTGTTTTTGGATTGAAAATATGGGTATTGATGGGAATAATAGTTGGTTTGTTCATTATAGTCATTCTTGTGGTGCTATCAATATGTCTTACTTTAAGAAAGAAGTCCAGAAGAGTCAATGGCAAGCTTCCGCTTAGCCATATCTTATCTGTTTCAGAAGAGATCAAAGAAATTAGAGTTGATCAAGTTTCATCAAATAATCATTCGCAAAACGGTGCTTTTATGAGTCTGAATGATAGATTTGGTGATAGTGAGTCTGAAAAGGTTTTGATGCAAACAAAGAACAGGGATAATAGCAGTCAATCAGGCTCATTTAATCACTTAGAGAAAGATGCAAATGGCTCTCAATCAGGTGAAGAAACTGGTCCCAAGAGCACTTCTGCTCACAGGTCTTCTTTGCATCCTATAACTGCACCATCCCCTTTGTCTGGTCTACCTGAATTCTCTCACCTTGGCTGGGGCCACTGGTTTACATTAAGGGACCTAGAACTTGCAACGAACAGATTCTCAAAAGACAATGTTATTGGTGAAGGTGGTTATGGAATTGTTTATCGAGGTCAACTTATCAATGGGAATCCTGTGGCCATTAAGAAGCTCCTCAATAATTTAGGACAAGCTGAAAAGGAATTTAGGGTGGAAGTTGAGGCTATTGGTCACGTGCGGCATAAGAACTTGGTGAGACTTTTGGGCTATTGTATTGAAGGCACTCACAGGTTATTGGTTTATGAGTATGTTAACAATGGCAATTTAGAGCAGTGGCTTCACGGCGCCATGCGGCAGCATGGCTTTCTTACTTGGGAAGCTCGAATGAAAATTGTCCTTGGAACAGCCAAAGCGCTGGCTTACTTGCATGAGGCAATTGAGCCAAAAGTTGTGCATCGAGATATTAAGTCGAGCAATATTCTTATTGATGATGACTTTAATGCCAAAATATCCGACTTTGGGCTGGCTAAGTTACTGGGTGCTGGAAAAAGTCATATTACAACTAGAGTAATGGGTACTTTTGGATATGTAGCTCCAGAATATGCCAATTCTGGCTTGCTAAATGAGAAGAGTGACGTTTACAGCTTTGGGGTATTGCTCCTTGAAGCAATTACAGGAAGAGACCCAGTGGACTATAGCCGACCAGCAGCTGAGGTAAATTTGGTTGACTGGCTTAAGATGATGGTAGGGTGTAGGCGCTCAGAAGAGGTGGTAGACCCCAACATTGAGACCAGACCATCAACAAGTGCCCTTAAACGAGCCCTTTTGACTGCTTTGAGGTGTGTTGATCCAGATGCTGAAAAAAGACCAAGGATGAGCCAAGTTGTCCGCATGCTTGAATCGGAGGAATATCCCATTCCTCGAGAGGATCGAAGAAGGCGAAGAAGTCAGGCTGGAAACATAGAGCTAGAGACTCAGAGGGAGACTTCTGATACAGATAAGAGTGACAATCCAGATTATAAGCCAAATGGCAGAAGGAACCAACACATGTAG 1515 0.4224 MASDLNSGLSKKTFVFGLKIWVLMGIIVGLFIIVILVVLSICLTLRKKSRRVNGKLPLSHILSVSEEIKEIRVDQVSSNNHSQNGAFMSLNDRFGDSESEKVLMQTKNRDNSSQSGSFNHLEKDANGSQSGEETGPKSTSAHRSSLHPITAPSPLSGLPEFSHLGWGHWFTLRDLELATNRFSKDNVIGEGGYGIVYRGQLINGNPVAIKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGTHRLLVYEYVNNGNLEQWLHGAMRQHGFLTWEARMKIVLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDDFNAKISDFGLAKLLGAGKSHITTRVMGTFGYVAPEYANSGLLNEKSDVYSFGVLLLEAITGRDPVDYSRPAAEVNLVDWLKMMVGCRRSEEVVDPNIETRPSTSALKRALLTALRCVDPDAEKRPRMSQVVRMLESEEYPIPREDRRRRRSQAGNIELETQRETSDTDKSDNPDYKPNGRRNQHM. 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03799 504 SMART serkin_6 182 453 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g03799 504 MobiDBLite consensus disorder prediction 106 151 - -
Seca5g03799 504 CDD STKc_IRAK 188 454 - -
Seca5g03799 504 ProSitePatterns Protein kinases ATP-binding region signature. 188 211 IPR017441 GO:0005524
Seca5g03799 504 FunFam Putative receptor-like serine/threonine-protein kinase 258 469 - -
Seca5g03799 504 MobiDBLite consensus disorder prediction 461 504 - -
Seca5g03799 504 FunFam Putative receptor-like protein kinase 164 257 - -
Seca5g03799 504 ProSitePatterns Serine/Threonine protein kinases active-site signature. 304 316 IPR008271 GO:0004672|GO:0006468
Seca5g03799 504 MobiDBLite consensus disorder prediction 101 151 - -
Seca5g03799 504 SUPERFAMILY Protein kinase-like (PK-like) 166 461 IPR011009 -
Seca5g03799 504 Gene3D Phosphorylase Kinase; domain 1 164 257 - -
Seca5g03799 504 Pfam Protein kinase domain 183 451 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g03799 504 Gene3D Transferase(Phosphotransferase) domain 1 258 469 - -
Seca5g03799 504 ProSiteProfiles Protein kinase domain profile. 182 459 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g03799 504 PANTHER OS01G0323000 PROTEIN 4 483 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03799 Seca-Chr5 95058237 95063242 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03799 159 456 Trihelix Transcription Factor Family AT1G70460 50.495 7.40e-95 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Seca5g03799 Pkinase 5.3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03799 - - gmx:732653 907.516