Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03791 ATGGAAGCTAAATTTGAAGGGAAAAATCAGTATTTGTATGGACCAGTGGTGCCAGAAATGAAGAGTGTTGGGAAGAGAAGTTTGGAATGGGATTTGAATGATTGGAAATGGGATGGAGATCTTTTTACTGCTAGGCAACTGAATTCAGTGCCATCAGATTGTGGGAGTCGTCAGCTGTTCCCAGTTGATCCTGAAATACCTGCAAATGCTGATATTTCAAACAATTTGACTTCTGGCTGGGATGATATCAACCCTGGGGAAGAAAAGAGAGAATTGGAGAAGAGGAGGAGGGGTGTTATTGCTGAAGGGATGGAGATGAATGATGAAATTGGTTCTCTTAATTTGAACCTTGGGGGTCAAGTATACCCTATCATGGAAGGGGAGGAAAAAAGTGGAAAGAAGACAAAGATAACTGTGACTACTTCAAACCGCGCAGTTTGTCAGGTGGAAGATTGTCGGGCTGATCTTAGTAATGCAAAGGATTACCACCGCCGTCACAAAGTTTGTGATGTGCATTCTAAGGCTAGCAGGGCACTAGTGGGAAATGTTATGCAGCGATTCTGTCAACAGTGTAGCAGGTTTCATGTTCTTCAAGAGTTTGATGAAGGGAAGAGAAGTTGTCGAAGGCGTCTGGCTGGCCACAATAAGAGGAGGAGGAAAACACATCCTGATGCTACTGCAGCTAATGGAGGTTCTCTGAACGAAGAAAGGGGCAGTAGCTATCTGTTAATGAGTTTGCTGAGGATATTGTCCAATATGCACTGA 765 0.4366 MEAKFEGKNQYLYGPVVPEMKSVGKRSLEWDLNDWKWDGDLFTARQLNSVPSDCGSRQLFPVDPEIPANADISNNLTSGWDDINPGEEKRELEKRRRGVIAEGMEMNDEIGSLNLNLGGQVYPIMEGEEKSGKKTKITVTTSNRAVCQVEDCRADLSNAKDYHRRHKVCDVHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTHPDATAANGGSLNEERGSSYLLMSLLRILSNMH. 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03791 254 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 130 232 IPR044817 GO:0003677
Seca5g03791 254 ProSiteProfiles Zinc finger SBP-type profile. 144 221 IPR004333 GO:0003677
Seca5g03791 254 MobiDBLite consensus disorder prediction 211 233 - -
Seca5g03791 254 FunFam Squamosa promoter-binding-like protein 14 138 208 - -
Seca5g03791 254 SUPERFAMILY SBT domain 145 225 IPR036893 GO:0003677|GO:0005634
Seca5g03791 254 Pfam SBP domain 147 220 IPR004333 GO:0003677
Seca5g03791 254 Gene3D - 138 208 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03791 Seca-Chr5 94985276 94989139 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03791 1 254 SBP-box Gene Family AT3G60030 50.965 8.21e-68 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Seca5g03791 SBP 1.9e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03791 - - gmx:100792774 457.603